Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09-
30] 612 sequences; 5,636,959 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq612 170 4e-37
seq49 168 2e-36
seq33 154 3e-32
seq2 91.5 3e-13
>seq612
Length=74583
Score = 170 bits (188), Expect = 4e-37
Identities = 171/222 (77%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953
||||| | || ||||| || || |||||||| || || || |||||||| | || ||
Sbjct 29768 CGAAGACGAAGCACAAGATGGAGCGTGGACTCCTTCTGAATATTATAATCAGAGAGTGTT 29709
Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013
|||||||| || ||||| |||||||| || || ||||| || ||||| ||||||| ||||
Sbjct 29708 CTTCCATCCTCAAGCTGTTTGCCTGCAAAAATCAGGCGCTGCTGGTCTGGAGGAATTCCT 29649
Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073
|||||||| ||||| || || ||||| || || |||||||| || || || |||||
Sbjct 29648 TCCTTGTCTTGGATTTTCTGCTTCACATTCTCAATGGTGTCCGAAGACTCCACTTCGAGC 29589
Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115
|| || ||||| ||||| || || || ||||| | ||||||
Sbjct 29588 GTAATGGTCTTGCCCGTAAGTGTTTTGACAAAAATTTGCATT 29547
>seq49
Length=10291
Score = 168 bits (186), Expect = 2e-36
Identities = 170/221 (77%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953
|| ||||| || || || || || || ||||||||||| || ||||| || | || ||
Sbjct 9957 CGCAGTCTCAGCACTAGATGGAGGGTTGACTCTTTTTGAATATTATAGTCAGAGAGCGTT 10016
Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013
|||||||| ||||||||||| || || || ||||||||||| |||||||| || | ||||
Sbjct 10017 CTTCCATCCTCCAGCTGCTTTCCAGCAAATATAAGGCGTTGCTGGTCAGGCGGTATTCCT 10076
Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073
|| ||||| ||||| ||||| || || ||||| |||||||| || |||||| || ||
Sbjct 10077 TCTTTGTCTTGGATTTTTTGCTTTACATTTTCAATGGTGTCTGAAGATTCAACTTCTAGC 10136
Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| || || || || || || || || || | |||||
Sbjct 10137 GTGATTGTTTTCCCAGTAAGTGTTTTGACGAAGATTTGCAT 10177
>seq33
Length=72831
Score = 154 bits (170), Expect = 3e-32
Identities = 169/225 (75%), Gaps = 0/225 (0%)
Strand=Plus/Minus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
||| |||| || ||||| |||||||| ||||| || ||||| || || || | ||| ||
Sbjct 32096 ACGGAGTCGGAGTACAAGATGAAGAGTAGACTCCTTCTGGATATTGTAGTCGGAAAGTGT 32037
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| |||||| || |||||||| || || || || ||||| || || || || || | |||
Sbjct 32036 ACGTCCATCCTCAAGCTGCTTTCCGGCAAAAATCAGGCGCTGCTGATCGGGGGGGATTCC 31977
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||||| || || ||||| || || || || ||||||||| | ||| ||||||||
Sbjct 31976 CTCCTTATCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCACTGGATTCTACCTCGAG 31917
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
|||||| |||||||| || || ||||| ||||| | ||||| ||
Sbjct 31916 AGTGATGGTCTTTCCTGTAAGGGTCTTAACAAAGATTTGCATCTT 31872
>seq2
Length=16922
Score = 91.5 bits (100), Expect = 3e-13
Identities = 76/93 (82%), Gaps = 0/93 (0%)
Strand=Plus/Minus
Query 139810 CCAAAGAAGCACGGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAGGAA 139869
||||||||||||||||| ||||| ||||||||||| || ||| | ||||||| ||||
Sbjct 4539 CCAAAGAAGCACGGAAGGGGAGGCCAATCTGCTCTTCGGTTTTCTCGGCTTCGAATGGAA 4480
Query 139870 AAGAGGCACAACTACTTGAGAAAAGTTGCAGAG 139902
||| |||| ||||| | |||||||| || |||
Sbjct 4479 AAGCGGCATAACTATGTAAGAAAAGTGGCCGAG 4447
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159142910799380
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |