Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09- 30] 612 sequences; 5,636,959 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq612 122 7e-23 seq33 100 2e-16 seq49 95.1 1e-14 >seq612 Length=74583 Score = 122 bits (134), Expect = 7e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||| | ||| |||||| ||| || || ||||||||||| | ||||||| | | || || Sbjct 29757 CACAAGATGGAGCGTGGACTCCTTCTGAATATTATAATCAGAGAGTGTTCTTCCATCCTC 29698 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||||||||| ||||| || || ||||||||||| | || | | || ||||| Sbjct 29697 AAGCTGTTTGCCTGCAAAAATCAGGCGCTGCTGGTCTGGAGGAATTCCTTCCTTGTCTTG 29638 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||||||||| || | || | | || || |||||||| || | ||| || | || Sbjct 29637 GATTTTCTGCTTCACATTCTCAATGGTGTCCGAAGACTCCACTTCGAGCGTAATGGTCTT 29578 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||| || ||||| ||||| |||||||| Sbjct 29577 GCCCGTAAGTGTTTTGACAAAAATTTGCAT 29548 >seq33 Length=72831 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || ||||| || |||| |||||| ||| | || |||||||| || || ||||| Sbjct 32066 CTCCTTCTGGATATTGTAGTCGGAAAGTGTACGTCCATCCTCAAGCTGCTTTCCGGCAAA 32007 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || || |||||||| |||| ||| | | ||| || || || || |||| | Sbjct 32006 AATCAGGCGCTGCTGATCGGGGGGGATTCCCTCCTTATCTTGAATCTTGGCCTTGACATT 31947 Query 39213 CGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | | || || || || || || || | ||||| | ||||| || || || ||||| Sbjct 31946 CTCAATGGTGTCACTGGATTCTACCTCGAGAGTGATGGTCTTTCCTGTAAGGGTCTTAAC 31887 Query 39273 AAAGATTTGCATCTTTAC 39290 ||||||||||||||| || Sbjct 31886 AAAGATTTGCATCTTGAC 31869 >seq49 Length=10291 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||| | ||| || || ||||||||| |||||||| || | || |||| | | || || Sbjct 9968 CACTAGATGGAGGGTTGACTCTTTTTGAATATTATAGTCAGAGAGCGTTCTTCCATCCTC 10027 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| || || ||||||||||| || |||||||| | || | | |||||||| Sbjct 10028 CAGCTGCTTTCCAGCAAATATAAGGCGTTGCTGGTCAGGCGGTATTCCTTCTTTGTCTTG 10087 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 |||||| || || | | | | || || || || || || | |||||| |||| Sbjct 10088 GATTTTTTGCTTTACATTTTCAATGGTGTCTGAAGATTCAACTTCTAGCGTGATTGTTTT 10147 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || || ||||| || ||||||||||| Sbjct 10148 CCCAGTAAGTGTTTTGACGAAGATTTGCAT 10177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429542396126756