Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09-
30] 612 sequences; 5,636,959 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq49 134 9e-27
seq33 93.3 3e-14
>seq49
Length=10291
Score = 134 bits (148), Expect = 9e-27
Identities = 170/233 (73%), Gaps = 8/233 (3%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| || ||||| ||||| || || || ||||| ||||| || |||||||| || |
Sbjct 10177 ATGCAAATCTTCGTCAAAACACTTACTGGGAAAACAATCACGCTAGAAGTTGAATCTTCA 10118
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| |||||| |||| |||||||| ||||||||||| ||||||| || ||
Sbjct 10117 GACACCATTGAAAATGTAAAGCAAAAAATCCAAGACAAAGAAGGAATACCGCCTGACCAG 10058
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACG----AACGCACTTTAGGCGATTA 23786
|| || | |||||||| || || || ||||| || | ||||| || | || ||
Sbjct 10057 CAACGCCTTATATTTGCTGGAAAGCAGCTGGAGGATGGAAGAACGCTCTCT----GACTA 10002
Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGAT 23839
|| || ||||||||||| || | ||| |||| | || ||||||||||||
Sbjct 10001 TAATATTCAAAAAGAGTCAACCCTCCATCTAGTGCTGAGACTGCGAGGAGGAT 9949
>seq33
Length=72831
Score = 93.3 bits (102), Expect = 3e-14
Identities = 145/203 (71%), Gaps = 6/203 (3%)
Strand=Plus/Plus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| ||||| || || ||||| ||||| || ||||| || ||||||||||| || || |||
Sbjct 31872 AAGATGCAAATCTTTGTTAAGACCCTTACAGGAAAGACCATCACTCTCGAGGTAGAATCC 31931
Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726
| ||||| |||| ||| | || | || ||| || || || || | || || ||
Sbjct 31932 AGTGACACCATTGAGAATGTCAAGGC-CAAGATTCAAGATAAGGAGGGAATCCCCCCCGA 31990
Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGAT 23784
||| ||||| | || |||||||| || || || || || | ||| |||||| |||
Sbjct 31991 TCAGCAGCGCCTGATTTTTGCCGGAAAGCAGCTTGAGGATGGACGTACACTTT--CCGAC 32048
Query 23785 TACAACATACAAAAAGAGTCCAC 23807
||||| || || || ||||| ||
Sbjct 32049 TACAATATCCAGAAGGAGTCTAC 32071
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 338007078870896
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |