Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09- 30] 612 sequences; 5,636,959 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq49 134 9e-27 seq33 93.3 3e-14 >seq49 Length=10291 Score = 134 bits (148), Expect = 9e-27 Identities = 170/233 (73%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| ||||| || || || ||||| ||||| || |||||||| || | Sbjct 10177 ATGCAAATCTTCGTCAAAACACTTACTGGGAAAACAATCACGCTAGAAGTTGAATCTTCA 10118 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| |||| |||||||| ||||||||||| ||||||| || || Sbjct 10117 GACACCATTGAAAATGTAAAGCAAAAAATCCAAGACAAAGAAGGAATACCGCCTGACCAG 10058 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACG----AACGCACTTTAGGCGATTA 23786 || || | |||||||| || || || ||||| || | ||||| || | || || Sbjct 10057 CAACGCCTTATATTTGCTGGAAAGCAGCTGGAGGATGGAAGAACGCTCTCT----GACTA 10002 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGAT 23839 || || ||||||||||| || | ||| |||| | || |||||||||||| Sbjct 10001 TAATATTCAAAAAGAGTCAACCCTCCATCTAGTGCTGAGACTGCGAGGAGGAT 9949 >seq33 Length=72831 Score = 93.3 bits (102), Expect = 3e-14 Identities = 145/203 (71%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||| || || ||||| ||||| || ||||| || ||||||||||| || || ||| Sbjct 31872 AAGATGCAAATCTTTGTTAAGACCCTTACAGGAAAGACCATCACTCTCGAGGTAGAATCC 31931 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| |||| ||| | || | || ||| || || || || | || || || Sbjct 31932 AGTGACACCATTGAGAATGTCAAGGC-CAAGATTCAAGATAAGGAGGGAATCCCCCCCGA 31990 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGAT 23784 ||| ||||| | || |||||||| || || || || || | ||| |||||| ||| Sbjct 31991 TCAGCAGCGCCTGATTTTTGCCGGAAAGCAGCTTGAGGATGGACGTACACTTT--CCGAC 32048 Query 23785 TACAACATACAAAAAGAGTCCAC 23807 ||||| || || || ||||| || Sbjct 32049 TACAATATCCAGAAGGAGTCTAC 32071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338007078870896