Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09-
30] 612 sequences; 5,636,959 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq113 178 2e-39
seq602 138 2e-27
>seq113
Length=5777
Score = 178 bits (196), Expect = 2e-39
Identities = 932/1472 (63%), Gaps = 38/1472 (3%)
Strand=Plus/Plus
Query 76799 AGATGCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTA 76858
|| ||| || ||||| || ||||| ||||| || || ||||| ||| |||| |||
Sbjct 3349 AGCTGCAGGCTTTGTTCGCAGATAATACATGCCGGTCTTTAGCCCCTTTTTCCACGAGTA 3408
Query 76859 GAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTG 76918
|||||||| || || || || ||| ||||| || |||||||| | |||||
Sbjct 3409 AAAATGCATAGAAGTGAGCTTCGAGATGGAAGGCTCGGCAATGTGAATATTGAGAGACTG 3468
Query 76919 ACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAAT 76978
||||| ||||| || || |||| || | ||||| | || ||| ||||||| |||||
Sbjct 3469 GCTTTGGTCGATAAAGGCGCCTCGGTCCACGGCCATATCAATGATGCTCTTTTGTGGAAT 3528
Query 76979 TTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGGTTTG---TATTTTGAAT 77035
|||||| | || | ||| || | || || || |||| | | |||| |||
Sbjct 3529 TTCCCACACGGTCCTATAAAGGTGCCTTATGTCTTCAGGAATCTCGGGTATATTCGCAAT 3588
Query 77036 GGAACCACCATCTGATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTC--TCT 77093
|| ||| | || || || | | ||| ||| |||||| ||| | |
Sbjct 3589 TGAGCCATTGTTTGCAATGATCCTGGTTCGCATAGACGCATCCCACAAA--CCTAGATTT 3646
Query 77094 GTTAAAACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGA 77153
| ||| | ||| ||||| |||| | ||||||||||| || || || |||| |
Sbjct 3647 ATCAAATCCTTAAAGAGATATTGATTGAGAATTTGAAATTCGCCGGATAACACTCGTCTT 3706
Query 77154 GTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTA 77213
|| || ||||| || || | || | |||| ||| || || ||||| | ||
Sbjct 3707 GTATATATATTTGACGTGTAGGCCTCAAAGCATTCGTTGAACCCTAATATTTGGGATGTC 3766
Query 77214 GAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTA 77273
|| || || ||||| || || | | || || || | |||| | | ||
Sbjct 3767 GAGGCCGTGGGCATCGGAGCTAGGAGCAAGGAGTTCCTAACGCCATACTTGGCAACCTTC 3826
Query 77274 TCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGT 77333
| || | | ||||||||| | | ||| || ||||||| ||| | ||| ||||
Sbjct 3827 GCACGAAGGGAATCCCAATCCCATAAAGATGATGGCACAACATTCCACATGTCGAATTGA 3886
Query 77334 AGAATTCCGTTACTAGCATATGA--TCCATTATATGTTTCATAAGGTCCTTCTGTTTCAG 77391
| || || | | | || | ||| | || | || || | || | | ||
Sbjct 3887 AAGATGCCCTGAGAA--ATGGGGCTTCCCTGGTAAGACTCGTATGTACCAGTTTGCTGAG 3944
Query 77392 CTAGTTCACA--ACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATT 77449
| || ||||| ||| ||| | | || | | || ||||| || || ||||| | ||
Sbjct 3945 CCAGCTCACACGACT-GCT-CAAGAGCAGCATGGTATATTGTCTCAAATATCTTTATGTT 4002
Query 77450 GAGATCTTGTGCTTCAATACTATCAAACGG-ATAATGTAAAAGAATAAAGGCATCTGCTA 77508
| ||| | ||| | || ||||| || || || | || || | |||||| |
Sbjct 4003 CAATTCTCGCGCTGGAGGGCTGTCAAAAGGCATTTTGCATCGTAAGAACGT-ATCTGCAA 4061
Query 77509 ATCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAA 77568
|| || || ||||| ||||| |||||||||||| |||| || |||| || |
Sbjct 4062 GACCTTGGACGCCAATTCCAATCGGTCTATGTCTCATATTTGATCGCCTAGCCTCCTCGA 4121
Query 77569 TAGGATAATAATTAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGT 77628
|||||| | || | || ||||| ||||| |||||| | || ||||| | || |
Sbjct 4122 CAGGATAGAAGTTGACATCGATAATATTATTAAGATTTTTTGTTACCACTTTGGCAACAT 4181
Query 77629 CCTTTAGTTTAAGAAAATCAAATCTTCCATC---TATAACAAACATGTTCAAAGCTATAG 77685
| ||| || ||||||||| || || | | | |||||| | || || |
Sbjct 4182 AATGTAGCATATCAAAATCAAAAGACCCGTCGCTTTTGATAAACATCGGAAGTGCAATGG 4241
Query 77686 ATGCTAGATTACAAACTGCTACCTCAT-TAGCGTTGGCATATTGTATTATCTCGGTACAT 77744
| || || |||||||| | ||||||| | | || || || || || || |||||
Sbjct 4242 AAGCGAGGTTACAAACGGAAACCTCATCTTTTGATGAG-TACTGGATGATTTCTGTACAC 4300
Query 77745 AGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCC 77804
| || | |||||| || ||||| |||| ||| || |||| ||||| || ||
Sbjct 4301 AAGTTTGAGCTTTTGATGGTCCCCAGGTTTTTTTGATTAGACTTTGCGTTGCAAGAATCT 4360
Query 77805 TTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACG 77864
||| | || || | || || |||||||| | || | || | ||| | | |||||
Sbjct 4361 TTAAAGAGCATGTATGGCGTTCCGGTTTCCACTTGCGCATCAAGAATGGCATACCAGA-- 4418
Query 77865 ACTCTAGCTTTTAT-CATAGAT--TTGTATCGCCTCTCTCTTT-----CATATTGAGTAT 77916
|||||| || ||| || || || |||| ||||| || ||
Sbjct 4419 ------GCTTTTGGGCAGGGATCGTTTTACGACCAAGACCTTTGGCCTCATATGAAGCAT 4472
Query 77917 ATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACA 77976
||| | |||||| || ||||||| || ||| || || |||||||| || |
Sbjct 4473 ATAACTCTTCAAACTCCGGTCCCCAACAGTCGGACAAACCTGGAGCGTCATTTGGACAGA 4532
Query 77977 TCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAG 78036
| | ||| ||||||| || ||||||||||| || ||||| ||||||||||| |
Sbjct 4533 AAAGAGTCCACATCCCATCTTGCTCCACTCGTTTCATGAACAGATCGGGTATCCATAGGG 4592
Query 78037 CAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAA 78096
|| ||| ||||| | | | | || || ||||| ||| || || | ||| | |
Sbjct 4593 CATAAAAAAGATCCCTGCACCGACCCTCGTCTTTTCCAAAATTTTTCTTTAAATCCAAGA 4652
Query 78097 ACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTAT 78156
| || | || ||||| ||||| || || | ||| ||||| | | |||||||||||||
Sbjct 4653 AATCGAAAACATCAGCGTGCCAGGGCTCCAAATAAATTGCAAAGGCGCCAGGTCGTTTAT 4712
Query 78157 TACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATAC 78216
| || || ||||| | ||||| || || | ||||| || | | ||| || | ||||
Sbjct 4713 TCCCGCCTTGATCGACATATCGTGCAGTCATGTTATAGACACGAAGCATGGGGACTATAC 4772
Query 78217 CGTTAGATGTTCCATTTGTTCCAGAAATATAA 78248
|||| || ||| |||||||| |||||||
Sbjct 4773 CGTTTGAGTAGCCACCTGTTCCAGCAATATAA 4804
>seq602
Length=19998
Score = 138 bits (152), Expect = 2e-27
Identities = 395/598 (66%), Gaps = 17/598 (3%)
Strand=Plus/Plus
Query 48137 TAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGT 48196
|| ||| ||||| || ||| ||||| || |||||||| || | ||||| ||||| ||
Sbjct 6833 TAGACAAGCAAACTCGGTATGTAGACCCTCGTCTCTACTGATCAGCTCGTTGGAAAAAGT 6892
Query 48197 GAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAA 48256
|| || ||||| || || || ||||| | |||||| || || || || || || |||||
Sbjct 6893 AAGCCCAGGCATCAGACCGCGCTTTTTTATCCAAAAGATGGCTGCAAACGACCCGGAAAA 6952
Query 48257 GAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAA--CTGGCTTC--GT 48312
||||||||| || || || |||||||| || ||||| || || ||| || |
Sbjct 6953 GAATATGCCCTCAACTGCGGCAAATGCAACCAG--TCTCTGCGAAAAGGGGGCATCTGGA 7010
Query 48313 TGTG-TATCCACCGTT--GTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTA 48369
| || ||||| ||| ||||| | || || || | | | ||| || ||| |
Sbjct 7011 TTTGCAATCCA--GTTCAAAGCCCATTTGGCTTTTTTTTCAATGCTAGGGATATATTCGA 7068
Query 48370 TAGCATTAAAGAGAAAGtttttttCAT--TGCT-ATCTTTAACGTAAGTATCTATTAAAA 48426
| || || || || ||| | |||| ||| || || || || || | ||
Sbjct 7069 TGGCGTT---GAACAATTTTAGACGCTCCTGCTCATCGCGAATATATGTGTCAATCAGAA 7125
Query 48427 GACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCG 48486
| |||||| || || || |||||||| || || || || |||||||| | | |
Sbjct 7126 GGGAATACATCTCAGAATGGATATTTTCCATCATGATTTGGAACCCGTAAAAGAAACGAG 7185
Query 48487 CTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCAT 48546
| |||| ||| || |||||| || ||| || || | ||||| |||||||| |||||||
Sbjct 7186 CCTCTGGGATTTGCACCTCCCTAGCAAAGCGAACAACTAAATTTTCATTTACAATTCCAT 7245
Query 48547 CACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTT 48606
| || |||||||| || || || || ||||||| ||| | | ||||
Sbjct 7246 CGGAGGCTGCAAAAAAGGCCAAAACGTGAGAGATAAAATGGCGTTCCCCGTCATTCAGAG 7305
Query 48607 TATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCT 48666
||| | | | ||| ||||| | || || ||||| | ||||| || || ||
Sbjct 7306 ACGCCCAATGGGTTAGATCCTTTGACAGGTCCACCTCTTCGACCGTCCAGAAGGAAGCAA 7365
Query 48667 CTGCTTTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCT 48724
| | |||||||| | | ||| || || |||| |||||| ||||| || |||||
Sbjct 7366 CCGACTTTTTATAAAAAAGCCAGATTTCCTCATATTTGATTGGAAAAATCACGAATCT 7423
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694663485783680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |