Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09- 30] 612 sequences; 5,636,959 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq113 178 2e-39 seq602 138 2e-27 >seq113 Length=5777 Score = 178 bits (196), Expect = 2e-39 Identities = 932/1472 (63%), Gaps = 38/1472 (3%) Strand=Plus/Plus Query 76799 AGATGCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTA 76858 || ||| || ||||| || ||||| ||||| || || ||||| ||| |||| ||| Sbjct 3349 AGCTGCAGGCTTTGTTCGCAGATAATACATGCCGGTCTTTAGCCCCTTTTTCCACGAGTA 3408 Query 76859 GAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTG 76918 |||||||| || || || || ||| ||||| || |||||||| | ||||| Sbjct 3409 AAAATGCATAGAAGTGAGCTTCGAGATGGAAGGCTCGGCAATGTGAATATTGAGAGACTG 3468 Query 76919 ACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAAT 76978 ||||| ||||| || || |||| || | ||||| | || ||| ||||||| ||||| Sbjct 3469 GCTTTGGTCGATAAAGGCGCCTCGGTCCACGGCCATATCAATGATGCTCTTTTGTGGAAT 3528 Query 76979 TTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGGTTTG---TATTTTGAAT 77035 |||||| | || | ||| || | || || || |||| | | |||| ||| Sbjct 3529 TTCCCACACGGTCCTATAAAGGTGCCTTATGTCTTCAGGAATCTCGGGTATATTCGCAAT 3588 Query 77036 GGAACCACCATCTGATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTC--TCT 77093 || ||| | || || || | | ||| ||| |||||| ||| | | Sbjct 3589 TGAGCCATTGTTTGCAATGATCCTGGTTCGCATAGACGCATCCCACAAA--CCTAGATTT 3646 Query 77094 GTTAAAACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGA 77153 | ||| | ||| ||||| |||| | ||||||||||| || || || |||| | Sbjct 3647 ATCAAATCCTTAAAGAGATATTGATTGAGAATTTGAAATTCGCCGGATAACACTCGTCTT 3706 Query 77154 GTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTA 77213 || || ||||| || || | || | |||| ||| || || ||||| | || Sbjct 3707 GTATATATATTTGACGTGTAGGCCTCAAAGCATTCGTTGAACCCTAATATTTGGGATGTC 3766 Query 77214 GAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTA 77273 || || || ||||| || || | | || || || | |||| | | || Sbjct 3767 GAGGCCGTGGGCATCGGAGCTAGGAGCAAGGAGTTCCTAACGCCATACTTGGCAACCTTC 3826 Query 77274 TCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGT 77333 | || | | ||||||||| | | ||| || ||||||| ||| | ||| |||| Sbjct 3827 GCACGAAGGGAATCCCAATCCCATAAAGATGATGGCACAACATTCCACATGTCGAATTGA 3886 Query 77334 AGAATTCCGTTACTAGCATATGA--TCCATTATATGTTTCATAAGGTCCTTCTGTTTCAG 77391 | || || | | | || | ||| | || | || || | || | | || Sbjct 3887 AAGATGCCCTGAGAA--ATGGGGCTTCCCTGGTAAGACTCGTATGTACCAGTTTGCTGAG 3944 Query 77392 CTAGTTCACA--ACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATT 77449 | || ||||| ||| ||| | | || | | || ||||| || || ||||| | || Sbjct 3945 CCAGCTCACACGACT-GCT-CAAGAGCAGCATGGTATATTGTCTCAAATATCTTTATGTT 4002 Query 77450 GAGATCTTGTGCTTCAATACTATCAAACGG-ATAATGTAAAAGAATAAAGGCATCTGCTA 77508 | ||| | ||| | || ||||| || || || | || || | |||||| | Sbjct 4003 CAATTCTCGCGCTGGAGGGCTGTCAAAAGGCATTTTGCATCGTAAGAACGT-ATCTGCAA 4061 Query 77509 ATCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAA 77568 || || || ||||| ||||| |||||||||||| |||| || |||| || | Sbjct 4062 GACCTTGGACGCCAATTCCAATCGGTCTATGTCTCATATTTGATCGCCTAGCCTCCTCGA 4121 Query 77569 TAGGATAATAATTAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGT 77628 |||||| | || | || ||||| ||||| |||||| | || ||||| | || | Sbjct 4122 CAGGATAGAAGTTGACATCGATAATATTATTAAGATTTTTTGTTACCACTTTGGCAACAT 4181 Query 77629 CCTTTAGTTTAAGAAAATCAAATCTTCCATC---TATAACAAACATGTTCAAAGCTATAG 77685 | ||| || ||||||||| || || | | | |||||| | || || | Sbjct 4182 AATGTAGCATATCAAAATCAAAAGACCCGTCGCTTTTGATAAACATCGGAAGTGCAATGG 4241 Query 77686 ATGCTAGATTACAAACTGCTACCTCAT-TAGCGTTGGCATATTGTATTATCTCGGTACAT 77744 | || || |||||||| | ||||||| | | || || || || || || ||||| Sbjct 4242 AAGCGAGGTTACAAACGGAAACCTCATCTTTTGATGAG-TACTGGATGATTTCTGTACAC 4300 Query 77745 AGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCC 77804 | || | |||||| || ||||| |||| ||| || |||| ||||| || || Sbjct 4301 AAGTTTGAGCTTTTGATGGTCCCCAGGTTTTTTTGATTAGACTTTGCGTTGCAAGAATCT 4360 Query 77805 TTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACG 77864 ||| | || || | || || |||||||| | || | || | ||| | | ||||| Sbjct 4361 TTAAAGAGCATGTATGGCGTTCCGGTTTCCACTTGCGCATCAAGAATGGCATACCAGA-- 4418 Query 77865 ACTCTAGCTTTTAT-CATAGAT--TTGTATCGCCTCTCTCTTT-----CATATTGAGTAT 77916 |||||| || ||| || || || |||| ||||| || || Sbjct 4419 ------GCTTTTGGGCAGGGATCGTTTTACGACCAAGACCTTTGGCCTCATATGAAGCAT 4472 Query 77917 ATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACA 77976 ||| | |||||| || ||||||| || ||| || || |||||||| || | Sbjct 4473 ATAACTCTTCAAACTCCGGTCCCCAACAGTCGGACAAACCTGGAGCGTCATTTGGACAGA 4532 Query 77977 TCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAG 78036 | | ||| ||||||| || ||||||||||| || ||||| ||||||||||| | Sbjct 4533 AAAGAGTCCACATCCCATCTTGCTCCACTCGTTTCATGAACAGATCGGGTATCCATAGGG 4592 Query 78037 CAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAA 78096 || ||| ||||| | | | | || || ||||| ||| || || | ||| | | Sbjct 4593 CATAAAAAAGATCCCTGCACCGACCCTCGTCTTTTCCAAAATTTTTCTTTAAATCCAAGA 4652 Query 78097 ACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTAT 78156 | || | || ||||| ||||| || || | ||| ||||| | | ||||||||||||| Sbjct 4653 AATCGAAAACATCAGCGTGCCAGGGCTCCAAATAAATTGCAAAGGCGCCAGGTCGTTTAT 4712 Query 78157 TACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATAC 78216 | || || ||||| | ||||| || || | ||||| || | | ||| || | |||| Sbjct 4713 TCCCGCCTTGATCGACATATCGTGCAGTCATGTTATAGACACGAAGCATGGGGACTATAC 4772 Query 78217 CGTTAGATGTTCCATTTGTTCCAGAAATATAA 78248 |||| || ||| |||||||| ||||||| Sbjct 4773 CGTTTGAGTAGCCACCTGTTCCAGCAATATAA 4804 >seq602 Length=19998 Score = 138 bits (152), Expect = 2e-27 Identities = 395/598 (66%), Gaps = 17/598 (3%) Strand=Plus/Plus Query 48137 TAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGT 48196 || ||| ||||| || ||| ||||| || |||||||| || | ||||| ||||| || Sbjct 6833 TAGACAAGCAAACTCGGTATGTAGACCCTCGTCTCTACTGATCAGCTCGTTGGAAAAAGT 6892 Query 48197 GAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAA 48256 || || ||||| || || || ||||| | |||||| || || || || || || ||||| Sbjct 6893 AAGCCCAGGCATCAGACCGCGCTTTTTTATCCAAAAGATGGCTGCAAACGACCCGGAAAA 6952 Query 48257 GAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAA--CTGGCTTC--GT 48312 ||||||||| || || || |||||||| || ||||| || || ||| || | Sbjct 6953 GAATATGCCCTCAACTGCGGCAAATGCAACCAG--TCTCTGCGAAAAGGGGGCATCTGGA 7010 Query 48313 TGTG-TATCCACCGTT--GTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTA 48369 | || ||||| ||| ||||| | || || || | | | ||| || ||| | Sbjct 7011 TTTGCAATCCA--GTTCAAAGCCCATTTGGCTTTTTTTTCAATGCTAGGGATATATTCGA 7068 Query 48370 TAGCATTAAAGAGAAAGtttttttCAT--TGCT-ATCTTTAACGTAAGTATCTATTAAAA 48426 | || || || || ||| | |||| ||| || || || || || | || Sbjct 7069 TGGCGTT---GAACAATTTTAGACGCTCCTGCTCATCGCGAATATATGTGTCAATCAGAA 7125 Query 48427 GACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCG 48486 | |||||| || || || |||||||| || || || || |||||||| | | | Sbjct 7126 GGGAATACATCTCAGAATGGATATTTTCCATCATGATTTGGAACCCGTAAAAGAAACGAG 7185 Query 48487 CTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCAT 48546 | |||| ||| || |||||| || ||| || || | ||||| |||||||| ||||||| Sbjct 7186 CCTCTGGGATTTGCACCTCCCTAGCAAAGCGAACAACTAAATTTTCATTTACAATTCCAT 7245 Query 48547 CACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTT 48606 | || |||||||| || || || || ||||||| ||| | | |||| Sbjct 7246 CGGAGGCTGCAAAAAAGGCCAAAACGTGAGAGATAAAATGGCGTTCCCCGTCATTCAGAG 7305 Query 48607 TATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCT 48666 ||| | | | ||| ||||| | || || ||||| | ||||| || || || Sbjct 7306 ACGCCCAATGGGTTAGATCCTTTGACAGGTCCACCTCTTCGACCGTCCAGAAGGAAGCAA 7365 Query 48667 CTGCTTTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCT 48724 | | |||||||| | | ||| || || |||| |||||| ||||| || ||||| Sbjct 7366 CCGACTTTTTATAAAAAAGCCAGATTTCCTCATATTTGATTGGAAAAATCACGAATCT 7423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694663485783680