Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09- 30] 612 sequences; 5,636,959 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq113 203 5e-47 seq602 181 2e-40 >seq113 Length=5777 Score = 203 bits (224), Expect = 5e-47 Identities = 954/1498 (64%), Gaps = 54/1498 (4%) Strand=Plus/Plus Query 75397 TGCTGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAA 75456 ||| || ||||| || ||||| ||||| || || ||||| ||| |||| ||| || Sbjct 3352 TGCAGGCTTTGTTCGCAGATAATACATGCCGGTCTTTAGCCCCTTTTTCCACGAGTAAAA 3411 Query 75457 ATGCATGCTTGTTAGTTTGGA-AT--AACTCGGATCGGCTATATGAATATTCATCGACTG 75513 |||||| || || || || || || || ||||| || |||||||| | ||||| Sbjct 3412 ATGCATAGAAGTGAGCTTCGAGATGGAA---GGCTCGGCAATGTGAATATTGAGAGACTG 3468 Query 75514 ACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAAT 75573 ||||| ||||| || || |||| || | ||||| | || ||| ||||||| ||||| Sbjct 3469 GCTTTGGTCGATAAAGGCGCCTCGGTCCACGGCCATATCAATGATGCTCTTTTGTGGAAT 3528 Query 75574 TTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGATTTG---TATTTTGAAT 75630 |||||| | || | ||| || | || || || |||| | | |||| ||| Sbjct 3529 TTCCCACACGGTCCTATAAAGGTGCCTTATGTCTTCAGGAATCTCGGGTATATTCGCAAT 3588 Query 75631 GGATCCGCCATCAGATATAATTGTATTCTTGATCTCAT-----CATTCCACAATTTTCTC 75685 || ||||| | ||| || || | || ||| ||| |||||| | Sbjct 3589 TGA---GCCATTGTTTGCAATG--ATCCTGGTTCGCATAGACGCATCCCACAAACCTAGA 3643 Query 75686 TCGGTTAAAACTCTAAGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTT 75745 | | ||| | ||| ||||| |||| | |||||||||||| || || || |||| | Sbjct 3644 TTTATCAAATCCTTAAAGAGATATTGATTGAGAATTTGAAATTCGCCGGATAACACTCGT 3703 Query 75746 CGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCA 75805 | || || ||||| || || | || | |||| ||| || || ||||| | Sbjct 3704 CTTGTATATATATTTGACGTGTAGGCCTCAAAGCATTCGTTGAACCCTAATATTTGGGAT 3763 Query 75806 GTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATT 75865 || || || || ||||| || || | | || || || | |||| | | Sbjct 3764 GTCGAGGCCGTGGGCATCGGAGCTAGGAGCAAGGAGTTCCTAACGCCATACTTGGCAACC 3823 Query 75866 TTATCTTTTAGATATTTCCAATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTAT 75925 || | || | | ||||||||| | | |||||| ||||||| ||| | ||| || Sbjct 3824 TTCGCACGAAGGGAATCCCAATCCCATAAAGATGATGGCACAACATTCCACATGTCGAAT 3883 Query 75926 TGTAGAATTCCGTTGCTAGCATATGA----TCCATTATATGTTTCGTAAGTCCCGTCCTT 75981 || | || || | || | ||| ||| | || | ||||| || || | Sbjct 3884 TGAAAGATGCCCTG---AGAA-ATGGGGCTTCCCTGGTAAGACTCGTATGTACCAGTTTG 3939 Query 75982 TTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTT 76041 | ||| || || || | ||| | ||| | | || ||||| || || ||||| | Sbjct 3940 CTGAGCCAGCTCACACGACTGCTCAAGAGCAGCATGGTATATTGTCTCAAATATCTTTAT 3999 Query 76042 ATTAAGATCTTGCGCTTCAAGACTATCAAAAGG-ATAATGTAAAAGAATAAATGCATCTG 76100 || | ||| ||||| | | || |||||||| || || | || || | ||||| Sbjct 4000 GTTCAATTCTCGCGCTGGAGGGCTGTCAAAAGGCATTTTGCATCGTAAGAAC-GTATCTG 4058 Query 76101 CTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTG 76160 | || || || || ||||| ||||| |||||||||||| |||| || ||| || Sbjct 4059 CAAGACCTTGGACGCCAATTCCAATCGGTCTATGTCTCATATTTGATCGCCTAGCCTCCT 4118 Query 76161 GAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCA 76220 | ||| || | || | ||| ||||| ||||| |||||| | || ||||| | | Sbjct 4119 CGACAGGATAGAAGTTGACATCGATAATATTATTAAGATTTTTTGTTACCACTTTGGCAA 4178 Query 76221 CGTCCTTTAGTTTGAGAAAATCAAATTTTCCATC---TATCACAAACATATTAAGAGCTA 76277 | | | ||| | ||||||||| || || | | | |||||| ||| || | Sbjct 4179 CATAATGTAGCATATCAAAATCAAAAGACCCGTCGCTTTTGATAAACATCGGAAGTGCAA 4238 Query 76278 TAGATGCTAGATTACAAACGGCTACCTCATTAGCATTG--GCATATTGTATTATCTCCGT 76335 | || || || |||||||||| ||||||| ||| | || || || || || || Sbjct 4239 TGGAAGCGAGGTTACAAACGGAAACCTCATCTT--TTGATGAGTACTGGATGATTTCTGT 4296 Query 76336 GCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGA 76395 || | || | ||||| || || || |||| ||| || |||| ||| || || Sbjct 4297 ACACAAGTTTGAGCTTTTGATGGTCCCCAGGTTTTTTTGATTAGACTTTGCGTTGCAAGA 4356 Query 76396 GTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCA 76455 || ||| | || | | || ||||| ||||| | || | || | ||| | | ||| Sbjct 4357 ATCTTTAAAGAGCATGTATGGCGTTCCGGTTTCCACTTGCGCATCAAGAATGGCATACCA 4416 Query 76456 GACGACTCTAGCTTTTATT-ATAGAT--TTGTATCGCTTCTCTCTTT-----CATATTGT 76507 || |||||| | ||| || || | |||| ||||| Sbjct 4417 GA--------GCTTTTGGGCAGGGATCGTTTTACGACCAAGACCTTTGGCCTCATATGAA 4468 Query 76508 GTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGA 76567 | ||||||| |||||| || ||||||| || |||||| ||| ||||| ||| Sbjct 4469 GCATATAACTCTTCAAACTCCGGTCCCCAACAGTCGGACAAACCTGGAGCGTCATTTGGA 4528 Query 76568 CACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCAT 76627 || | | | |||| ||||||| || || |||||||| || ||||| ||||||||| Sbjct 4529 CAGAAAAGAGTCCACATCCCATCTTGCTCCACTCGTTTCATGAACAGATCGGGTATCCAT 4588 Query 76628 AGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCT 76687 || ||| ||| ||||| | | | || || || ||||| ||| || || | ||| Sbjct 4589 AGGGCATAAAAAAGATCCCTGCACCGACCCTCGTCTTTTCCAAAATTTTTCTTTAAATCC 4648 Query 76688 AGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGT 76747 | ||| || | || ||||| ||||| || || | ||| || || | | || |||||| Sbjct 4649 AAGAAATCGAAAACATCAGCGTGCCAGGGCTCCAAATAAATTGCAAAGGCGCCAGGTCGT 4708 Query 76748 TTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATA 76807 ||||| || || ||||| | ||||| ||||| | ||||| || | | ||| || | Sbjct 4709 TTATTCCCGCCTTGATCGACATATCGTGCAGTCATGTTATAGACACGAAGCATGGGGACT 4768 Query 76808 ATGCCGTTAGATGTA-CCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTA 76864 || ||||| || ||| ||| |||||||| ||||||| ||| | || | |||||| Sbjct 4769 ATACCGTTTGA-GTAGCCACCTGTTCCAGCAATATAAGACCCAGAGGCTCTTATATTA 4825 >seq602 Length=19998 Score = 181 bits (200), Expect = 2e-40 Identities = 578/886 (65%), Gaps = 19/886 (2%) Strand=Plus/Plus Query 46339 TTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 46398 ||||| ||||| || || || || ||||| || |||| ||| || || || Sbjct 6546 TTTTGATATTCGCCAACTTTCTTTTCAAAAAAGTTGCTTTTTCCTGACATGGAAATTAAA 6605 Query 46399 TCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAA-AT 46457 ||||| ||||||||||| || |||||||| | |||| || || || | || | Sbjct 6606 TCCATGAAATCAAACGGGTTTTCGACATTATACAGTTTTGACAAACC-AAGTGAGAGCAG 6664 Query 46458 CAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAG 46517 |||||||| |||||||| |||||| ||||| | ||||||| || || || Sbjct 6665 AAGTCTATCGGCAACGAAGCAGATATACTGCTTCATTAAGGTGGAATTCATACCAATTAG 6724 Query 46518 TTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATC--CGATATT 46575 | |||||| |||| || | ||| ||||||||| | || || || ||||| | Sbjct 6725 GTCGACCGGCAGAGAATCAACCAAAAAAGACTGTTCAATACTAACGGCCTCATCGATAAT 6784 Query 46576 ATCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCA 46635 | || | | | || | || || | ||| || | | || ||| ||| Sbjct 6785 GGC-ATAT-ATAATCGCCGGATCTGCCGGCTTTTTCAGGTGGGAATGTAATAGACAAGCA 6842 Query 46636 AAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGC 46695 || || ||| || || || |||||||| || | ||||| ||||| || ||||||||| Sbjct 6843 AACTCGGTATGTAGACCCTCGTCTCTACTGATCAGCTCGTTGGAAAAAGTAAGCCCAGGC 6902 Query 46696 ATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCT 46755 || || || |||||||| | |||||| || || || || || || |||||||||||||| Sbjct 6903 ATCAGACCGCGCTTTTTTATCCAAAAGATGGCTGCAAACGACCCGGAAAAGAATATGCCC 6962 Query 46756 TCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAA--CTGGCATC---ATTATGAATCC 46810 || || || || ||||| || || ||||| || || |||||| ||| ||||| Sbjct 6963 TCAACTGCGGCAAATGCAACCAG--TCTCTGCGAAAAGGGGGCATCTGGATTTGCAATCC 7020 Query 46811 ACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGA 46870 | | |||||| | || ||||| | | | ||| || ||| || || || || Sbjct 7021 AGTTCAAAGCCCATTTGGCTTTTTTTTCAATGCTAGGGATATATTCGATGGCGTT---GA 7077 Query 46871 GAAAGttt---ttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTT 46927 || ||| || | ||| || |||||| || || | ||| |||||| | Sbjct 7078 ACAATTTTAGACGCTCCTGCTCATCGCGAATATATGTGTCAATCAGAAGGGAATACATCT 7137 Query 46928 CTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCT 46987 | ||||| || ||||| || || || || |||||||| | | || || | || | Sbjct 7138 CAGAATGGATATTTTCCATCATGATTTGGAACCCGTAAAAGAAACGAGCCTCTGGGATTT 7197 Query 46988 GTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAA 47047 | ||||| || ||| || || ||||| ||||| || |||||||| || |||| Sbjct 7198 GCACCTCCCTAGCAAAGCGAACAACTAAATTTTCATTTACAATTCCATCGGAGGCTGCAA 7257 Query 47048 AAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCAT 47107 |||| ||||| || || ||||||| ||| || | |||| ||| | Sbjct 7258 AAAAGGCCAAAACGTGAGAGATAAAATGGCGTTCCCCGTCATTCAGAGACGCCCAATGGG 7317 Query 47108 TGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTAT 47167 | | ||| ||||| | || || ||||| | |||||||| || || | | ||||||| Sbjct 7318 TTAGATCCTTTGACAGGTCCACCTCTTCGACCGTCCAGAAGGAAGCAACCGACTTTTTAT 7377 Query 47168 ACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCT 47213 | | | ||| || || ||||| ||| |||||||| || ||||| Sbjct 7378 AAAAAAGCCAGATTTCCTCATATTTGATTGGAAAAATCACGAATCT 7423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712928946051840