Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09- 30] 612 sequences; 5,636,959 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq49 131 4e-25 seq612 127 5e-24 seq33 127 5e-24 >seq49 Length=10291 Score = 131 bits (144), Expect = 4e-25 Identities = 162/220 (74%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| || || ||||| || || ||||||||||| || || || || | | ||||| Sbjct 9960 AGTCTCAGCACTAGATGGAGGGTTGACTCTTTTTGAATATTATAGTCAGAGAGCGTTCTT 10019 Query 151947 CCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTT 152004 ||||| || || ||||| || || || ||||| | |||||||| | || ||||||| Sbjct 10020 CCATCCTCCAGCTGCTTT--CCAGCAAATATAAGGCGTTGCTGGTCAGGCGGTATTCCTT 10077 Query 152005 CCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAG 152064 | || ||||| |||||||| || ||| | || | | |||||||| || ||||| || | Sbjct 10078 CTTTGTCTTGGATTTTTTGCTTTACATTTTCAATGGTGTCTGAAGATTCAACTTCTAGCG 10137 Query 152065 TAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || ||||| || || || || || ||||||| ||||| Sbjct 10138 TGATTGTTTTCCCAGTAAGTGTTTTGACGAAGATTTGCAT 10177 >seq612 Length=74583 Score = 127 bits (140), Expect = 5e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||| || || ||||| || || || || ||||| | | ||||| ||||| Sbjct 29759 AGCACAAGATGGAGCGTGGACTCCTTCTGAATATTATAATCAGAGAGTGTTCTTCCATCC 29700 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| || || || || || | ||||||||| | | ||||||||||| ||| Sbjct 29699 TCAAGCTGTTTGCCTGCAAAAATCAGGCGCTGCTGGTCTGGAGGAATTCCTTCCTTGTCT 29640 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || ||||| || || ||| |||| | | |||| ||| ||| ||||| || ||||| || Sbjct 29639 TGGATTTTCTGCTTCACATTCTCAATGGTGTCCGAAGACTCCACTTCGAGCGTAATGGTC 29580 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 |||||||| || || || || || | |||||| Sbjct 29579 TTGCCCGTAAGTGTTTTGACAAAAATTTGCATT 29547 >seq33 Length=72831 Score = 127 bits (140), Expect = 5e-24 Identities = 166/226 (73%), Gaps = 8/226 (4%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||||| ||| |||||||||||||||||||| || ||||| ||||| |||| | || | Sbjct 32093 GAGTCGGAGTACAAGATGAAGAGTAGACTCCTTCTGGATATTGTAGTCGGAAAGTGTACG 32034 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 ||||| || || ||||| ||||| || || || | |||||| || | | |||||| Sbjct 32033 TCCATCCTCAAGCTGCTTT--CCGGCAAAAATCAGGCGCTGCTGATCGGGGGGGATTCCC 31976 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGT--CTGAACTCTCTACTTCAA 152061 ||||| |||||||| || |||||| |||| | | ||| ||| | ||||| || | Sbjct 31975 TCCTTATCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCACTGGA--TTCTACCTCGA 31918 Query 152062 GAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 |||| || || || || || || ||||| || |||| ||||| || Sbjct 31917 GAGTGATGGTCTTTCCTGTAAGGGTCTTAACAAAGATTTGCATCTT 31872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153811752602652