Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09-
30] 612 sequences; 5,636,959 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq612 134 1e-26
seq33 91.5 1e-13
seq49 84.2 2e-11
>seq612
Length=74583
Score = 134 bits (148), Expect = 1e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||| ||||| | ||| ||||| |||||| |||||||||||| ||||| || |||
Sbjct 29774 CCTCCGCGAAGACGAAGCACAAGATGGAGCGTGGACTCCTTCTGAATATTATAATCAGAG 29715
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| || | | || || ||||| ||||| || || ||||||||||| ||||| | |||
Sbjct 29714 AGTGTTCTTCCATCCTCAAGCTGTTTGCCTGCAAAAATCAGGCGCTGCTGGTCTGGAGGA 29655
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815
| | |||||||| |||||| ||||||| | | ||||| ||||||||
Sbjct 29654 ATTCCTTCCTTGTCTTGGATTTTCTGCTTCACATTCTCAATGGTGTCCGAAGACTCCACT 29595
Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| | ||| || || || ||||| || || || || ||||| |||||
Sbjct 29594 TCGAGCGTAATGGTCTTGCCCGTAAGTGTTTTGACAAAAATTTGCAT 29548
>seq33
Length=72831
Score = 91.5 bits (100), Expect = 1e-13
Identities = 162/234 (69%), Gaps = 2/234 (1%)
Strand=Plus/Minus
Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692
|| || || || || || | || ||||| || || ||||||||| || || ||||||
Sbjct 32104 CCACCACCACGGAGTCGGAGTACAAGATGAAGAGTAGACTCCTTCTGGATATTGTAGTCG 32045
Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752
|| || || || | || || |||||||| ||||| || ||||||||||| || || | |
Sbjct 32044 GAAAGTGTACGTCCATCCTCAAGCTGCTTTCCGGCAAAAATCAGGCGCTGCTGATCGGGG 31985
Query 41753 GGAACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTC 41811
|| | | |||||| | | ||| | || | ||| | | | ||||| || || ||
Sbjct 31984 GGGATTCCCTCCTTAT-CTTGAATCTTGGCCTTGACATTCTCAATGGTGTCACTGGATTC 31926
Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
||||| | || || || || || || || ||||| || || || ||||| ||
Sbjct 31925 TACCTCGAGAGTGATGGTCTTTCCTGTAAGGGTCTTAACAAAGATTTGCATCTT 31872
>seq49
Length=10291
Score = 84.2 bits (92), Expect = 2e-11
Identities = 145/211 (69%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712
||| ||||| || || ||| || ||||| |||||||| ||||| || | | || ||
Sbjct 9968 CACTAGATGGAGGGTTGACTCTTTTTGAATATTATAGTCAGAGAGCGTTCTTCCATCCTC 10027
Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772
|||||||| || || ||||| ||||| || ||||| | || | | || |||||
Sbjct 10028 CAGCTGCTTTCCAGCAAATATAAGGCGTTGCTGGTCAGGCGGTATTCCTTCTTTGTCTTG 10087
Query 41773 GATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832
|||||||||||| | | ||||| || || || || | ||| || |||||
Sbjct 10088 GATTTTTTGCTTTACATTTTCAATGGTGTCTGAAGATTCAACTTCTAGCGTGATTGTTTT 10147
Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|| || || || || ||||| || ||||||
Sbjct 10148 CCCAGTAAGTGTTTTGACGAAGATTTGCATG 10178
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462300463374400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |