Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20displodere_20[genbank_20GCA_5F001642395.1_202016-05-11] 42 sequences; 3,066,400 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq4 156 9e-33 >seq4 Length=66353 Score = 156 bits (172), Expect = 9e-33 Identities = 364/538 (68%), Gaps = 21/538 (4%) Strand=Plus/Plus Query 230095 TTTGATGCCATTGAAAACATCCCGGCGGTTCATAACAAGGCAAAGTGGGCTCAGAAATGG 230154 ||| |||||||||| |||||||||| | | || |||||| | ||||| | | ||| Sbjct 59299 TTTAATGCCATTGAGAACATCCCGGTCATAAAAAAGAAGGCAGACTGGGCGCTGCGGTGG 59358 Query 230155 CTAGAACCTGGTAAATCG---TTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGT 230211 || | || ||| | ||||| ||||| || || |||| | ||||||||||| Sbjct 59359 ATATCAGATGCTAAGGCCAGCTTTGCAGAGCGGCTAGTGGCCTTTGCCTGTGTTGAAGGC 59418 Query 230212 ATTCTGTTTTCCGGGAGTTTCTGC-GCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCC 230270 || | || |||||| || ||| || ||||| ||||| ||| ||| | ||||| Sbjct 59419 ATCTTCTTCTCCGGGTCATT-TGCAGCTATCTTCTGGCTCAAGAAACGAGGACTTATGCC 59477 Query 230271 TGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGG 230330 ||| || | ||||||||| | ||||| || ||||| || || ||| | || | Sbjct 59478 TGGGCTAACCTTCTCTAACGAGCTTATCAGCCGAGACGAAGGCCTTCATTGCGACTTTG- 59536 Query 230331 CGAGCTTA-TGTATTCAAAGCTCCAGAACAAGCTACCATTCGAGACGGTCAAACAAATCA 230389 | || || | | || | || | |||||| | ||| | |||| ||||| Sbjct 59537 CTTGCCTACTACACTCGCACCTAAACAACAAG------TGCGATAAAATCAAGAAAATCG 59590 Query 230390 TTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC-CTT 230448 || ||| || |||| || || || |||||| | || || ||| | || ||| | || Sbjct 59591 TTGAAGAGGCCGTTGTAATTGAGAAAGAGTTCTTATGCGAGGCTCTCCCC-GTCTCTCTC 59649 Query 230449 ATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTT 230508 |||||||| || | || |||| | |||||||| || || || || ||||| || || Sbjct 59650 ATTGGCATCAATGTCGATACTATGTGCCAGTACATTGAGTTTGTTGCTGACCGGCTTCTT 59709 Query 230509 GTTGCACTTGGTTACGAG--AAAG-TGTACAACTCTAAGAACCCCTTTGCATTTATGGAG 230565 | | ||||| |||| |||| | |||||| | ||||||| || | ||||||||| Sbjct 59710 CTCTCGCTTGG---CGAGCCAAAGATATACAACGCCCAGAACCCATTCGACTTTATGGAG 59766 Query 230566 CTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGA 230623 ||| ||||| | ||| ||| ||||||||||||| ||| | ||| ||| || |||| Sbjct 59767 TACATCTCGCTGCGAGGAAAGTCCAACTTCTTCGAGAAGAGGGTCTCTGAGTACCAGA 59824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057823430758460