Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20displodere_20[genbank_20GCA_5F001642395.1_202016-05-11] 42 sequences; 3,066,400 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq4 183 3e-41 >seq4 Length=66353 Score = 183 bits (202), Expect = 3e-41 Identities = 402/596 (67%), Gaps = 6/596 (1%) Strand=Plus/Minus Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020 || || || || |||||||| | || ||||||| ||||||||| |||||||| || || Sbjct 59543 AGGCAAGCAAAGTCGCAATGAAGGCCTTCGTCTCGGCTGATAAGCTCGTTAGAGAAGGTT 59484 Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080 | ||| ||||| |||||||||||| | ||| || || || || || ||||| || ||| Sbjct 59483 AGCCCAGGCATAAGTCCTCGTTTCTTGAGCCAGAAGATAGCTGCAAATGACCCGGAGAAG 59424 Query 17081 AATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTG-TT 17139 || || || || || | ||||| || | || || || || | | || ||| | | Sbjct 59423 AAGATGCCTTCAACACAGGCAAAGGCCACTAGCCGCTCTGCAAAGCTGGC--CTTAGCAT 59366 Query 17140 ACGA-ATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGG 17198 || ||||| | || |||| || || || | |||||| || | || |||| Sbjct 59365 CTGATATCCACCGCAGCGCCCAGTCTGCCTTCTTTTTTATGACCGGGATGTTCTCAATGG 59306 Query 17199 CCTTAAATAA-TTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTG 17257 | ||||| || |||||| || | | || | || ||||| || ||||||||| | Sbjct 59305 CATTAAACAAGAAAGTCTTTTCGCTCTGGCTC-TTGATGTACGTGTCAATGAGTAGGGAG 59247 Query 17258 TACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCC 17317 ||||| || | ||| |||||||| || ||||| || ||||| |||||||| ||||| Sbjct 59246 TACATCTCAGCGTGGATGTTCTCAATCATAATCTGGAAGCCGTAGAAGCATCGAGCTTCA 59187 Query 17318 GCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTC 17377 ||||| || || | || | ||| | || ||||| || || || ||||| Sbjct 59186 CTGATTTGCACCTCAGAGGCAAACCTTTCAACCAGGTTTTCATTAACAATTCCGTCAGAG 59127 Query 17378 GCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGC 17437 ||||| || || || | | | |||||| | | |||||| | |||| | Sbjct 59126 GCGGCAAAGAAGGCGAGGACGTAGGAAATGAAGTGTCTTTCGTTGGCGTTAAGCTTCTCC 59067 Query 17438 CAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCC 17497 ||||| | ||| | | || |||||||| | |||||| |||||||||||||| Sbjct 59066 CAGTCAGCCATGTCTCTTCCAAGGTCGACTTCTTCTGCGGTCCAGAAACTAGCCACTGCG 59007 Query 17498 TTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAATACAACATATCTATC 17553 ||||| ||||| ||||| || || | ||| || | || || | ||| ||||||| Sbjct 59006 TTTTTGTACATGTTCCAGATGTCGTAGTACTGCACTGGAAAGATGACAAATCTATC 58951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517545328288560