Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20displodere_20[genbank_20GCA_5F001642395.1_202016-05-11] 42 sequences; 3,066,400 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq4 232 7e-56 >seq4 Length=66353 Score = 232 bits (256), Expect = 7e-56 Identities = 414/601 (69%), Gaps = 14/601 (2%) Strand=Plus/Minus Query 16198 TAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGT 16257 ||| || || ||||||||||| || |||||||||| ||||||||| ||||| || || || Sbjct 59544 TAGGCAAGCAAAGTCGCAATGAAGGCCTTCGTCTCGGCTGATAAGCTCGTTAGAGAAGGT 59485 Query 16258 TAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAA 16317 || ||| ||||| |||||||||||| | |||||| || || ||||||||||| || || Sbjct 59484 TAGCCCAGGCATAAGTCCTCGTTTCTTGAGCCAGAAGATAGCTGCAAATGACCCGGAGAA 59425 Query 16318 GAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGC------GTACGTAGCATC 16371 ||| || || |||||| | ||||| || | || || || || | | ||||||| Sbjct 59424 GAAGATGCCTTCAACACAGGCAAAGGCCACTAGCCGCTCTGCAAAGCTGGCCTTAGCATC 59365 Query 16372 TTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTC 16431 | || ||||| | | |||| || || || | |||||| || | || Sbjct 59364 -TGAT-----ATCCACCGCAGCGCCCAGTCTGCCTTCTTTTTTATGACCGGGATGTTCTC 59311 Query 16432 TATGGCCTTAAACAA-TTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTA 16490 ||||| |||||||| |||||| || || | || ||||| ||||| |||| Sbjct 59310 AATGGCATTAAACAAGAAAGTCTTTTCGCTCTGGCTC-TTGATGTACGTGTCAATGAGTA 59252 Query 16491 AACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAG 16550 |||||| || | ||| |||||||| || ||||| || || ||||||||||||| Sbjct 59251 GGGAGTACATCTCAGCGTGGATGTTCTCAATCATAATCTGGAAGCCGTAGAAGCATCGAG 59192 Query 16551 CCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGT 16610 | || ||||| || || | ||| | ||| ||||||| ||||| || || |||| Sbjct 59191 CTTCACTGATTTGCACCTCAGAGGCAAACCTTTCAACCAGGTTTTCATTAACAATTCCGT 59132 Query 16611 CACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAA 16670 || || ||||| || || | | || |||||| | | |||||| | |||| Sbjct 59131 CAGAGGCGGCAAAGAAGGCGAGGACGTAGGAAATGAAGTGTCTTTCGTTGGCGTTAAGCT 59072 Query 16671 TATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCA 16730 | | ||| || | ||| | | || |||||||||| ||||| || ||||||| Sbjct 59071 TCTCCCAGTCAGCCATGTCTCTTCCAAGGTCGACTTCTTCTGCGGTCCAGAAACTAGCCA 59012 Query 16731 CTGCCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATACGACGTATCTAT 16790 |||| ||||| ||||| ||||| || || | ||| || | ||||| | ||| |||||| Sbjct 59011 CTGCGTTTTTGTACATGTTCCAGATGTCGTAGTACTGCACTGGAAAGATGACAAATCTAT 58952 Query 16791 C 16791 | Sbjct 58951 C 58951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511414131507440