Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20displodere_20[genbank_20GCA_5F001642395.1_202016-05-11] 42 sequences; 3,066,400 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq4 179 4e-40 >seq4 Length=66353 Score = 179 bits (198), Expect = 4e-40 Identities = 399/592 (67%), Gaps = 9/592 (2%) Strand=Plus/Minus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || || || ||||| || || || ||||||| || || | ||||| || || || || Sbjct 59540 CAAGCAAAGTCGCAATGAAGGCCTTCGTCTCGGCTGATAAGCTCGTTAGAGAAGGTTAGC 59481 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 24254 || ||||| || || || || || ||||| || || | |||||||| || || ||||| Sbjct 59480 CCAGGCATAAGTCCTCGTTTCTTGAGCCAGAAGATAGCTGCAAATGACCCGGAGAAGAAG 59421 Query 24255 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATGT--- 24311 || ||||| || |||||||| | || | ||| || | | ||| | ||| | Sbjct 59420 ATGCCTTCAACACAGGCAAAGGCCACTAGCCGCTCTGCAAAGCTGGCCTTAGCATCTGAT 59361 Query 24312 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 24371 |||||| | ||||| || ||||||||||||| || || |||| || |||||| Sbjct 59360 ATCCACCGCAGCGCCCAGTCTGCCTTCTTTTTTATGACCGGGATGTTCTCAATGGCATTA 59301 Query 24372 AAGA-GATAGtttttttCATTACTATCT-TTAACATATGTATCAATCAAAAGACTATACA 24429 || | || ||| |||| | || || || | || || ||||| | || |||| Sbjct 59300 AACAAGAAAGTCTTTTCGCT--CTGGCTCTTGATGTACGTGTCAATGAGTAGGGAGTACA 59243 Query 24430 TTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAA 24489 | || | || ||||| ||||| || || || |||||||| |||| ||| || | | Sbjct 59242 TCTCAGCGTGGATGTTCTCAATCATAATCTGGAAGCCGTAGAAGCATCGAGCTTCACTGA 59183 Query 24490 TCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTG 24549 | || || || ||| | ||| | | |||||||| || ||||||||| ||| | Sbjct 59182 TTTGCACCTCAGAGGCAAACCTTTCAACCAGGTTTTCATTAACAATTCCGTCAGAGGCGG 59123 Query 24550 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA-GTTTATTCCAA 24608 |||| || || | || | || || | | |||||| ||| |||| | || | ||| Sbjct 59122 CAAAGAAGGCGAGGACGTAGGAAATGAAGTGTCTTTCGT-TGGCGTTAAGCTTCTCCCAG 59064 Query 24609 TCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 24668 ||| || ||| | | || |||||||| | ||||| || ||| |||| ||| Sbjct 59063 TCAGCCATGTCTCTTCCAAGGTCGACTTCTTCTGCGGTCCAGAAACTAGCCACTGCGTTT 59004 Query 24669 TTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTAT 24720 || ||||| ||||||||||| | || || | |||||| || |||||||||| Sbjct 59003 TTGTACATGTTCCAGATGTCGTAGTACTGCACTGGAAAGATGACAAATCTAT 58952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721288296160