Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20displodere_20[genbank_20GCA_5F001642395.1_202016-05-11] 42 sequences; 3,066,400 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq4 228 8e-55 seq12 131 2e-25 seq2 131 2e-25 >seq4 Length=66353 Score = 228 bits (252), Expect = 8e-55 Identities = 393/563 (70%), Gaps = 12/563 (2%) Strand=Plus/Plus Query 116633 GACATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGAC 116692 ||||| ||| |||||||||||| || | ||| |||||||||| || || || ||| Sbjct 58984 GACATCTGGAACATGTACAAAAACGCAGTGGCTAGTTTCTGGACCGCAGAAGAAGTCGAC 59043 Query 116693 CTGTCCAAG-GACACGAGCGACTGGGAG-CGCTTGAACGACAACGAGCGCCATTTCATCA 116750 || | ||| |||| | ||||||||| |||| |||| |||||| | || ||||| Sbjct 59044 CT-TGGAAGAGACATGGCTGACTGGGAGAAGCTT-AACGCCAACGAAAGACACTTCATTT 59101 Query 116751 AGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGC 116810 |||| || ||||| || |||||| ||||| || || || || || ||||| || Sbjct 59102 CCTACGTCCTCGCCTTCTTTGCCGCCTCTGACGGAATTGTTAATGAAAACCTGGTTGAAA 59161 Query 116811 GTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCA 116870 | || || |||||||| | || || || |||||||||||||| ||||| | Sbjct 59162 GGTTTGCCTCTGAGGTGCAAATCAGTGAAGCTCGATGCTTCTACGGCTTCCAGATTATGA 59221 Query 116871 TGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT---GCGCTCTT 116927 | |||||| | ||| | || ||||| || ||||| ||||||||| | | || Sbjct 59222 TTGAGAACATCCACGCTGAGATGTACTCCCTACTCATTGACACGTACATCAAGAGC---- 59277 Query 116928 CGGAG-GAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAG 116986 | ||| || ||| ||||| || ||||| |||| || ||| | | ||| ||||| Sbjct 59278 CAGAGCGAAAAGACTTTCTTGTTTAATGCCATTGAGAACATCCCGGTCATAAAAAAGAAG 59337 Query 116987 GCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTG 117046 || || ||||||||||| ||||| | | ||||| ||| | ||||| || ||| Sbjct 59338 GCAGACTGGGCGCTGCGGTGGATATCAGATGCTAAGGCCAGCTTTGCAGAGCGGCTAGTG 59397 Query 117047 GCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTC 117106 ||||| || || || ||| ||||||| || || || || || || || |||||| Sbjct 59398 GCCTTTGCCTGTGTTGAAGGCATCTTCTTCTCCGGGTCATTTGCAGCTATCTTCTGGCTC 59457 Query 117107 AAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAG 117166 |||||||| || || ||||| || || || ||| |||||||| ||| | | ||||| Sbjct 59458 AAGAAACGAGGACTTATGCCTGGGCTAACCTTCTCTAACGAGCTTATCAGCCGAGACGAA 59517 Query 117167 GGTCTGCATTGCGACTTTGCCTG 117189 || || |||||||||||||| || Sbjct 59518 GGCCTTCATTGCGACTTTGCTTG 59540 >seq12 Length=514210 Score = 131 bits (144), Expect = 2e-25 Identities = 160/214 (75%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| ||||||||||| ||||| || ||||| || |||||| | |||||| || ||| Sbjct 293106 AATGCAGATATTCGTAAAGACGCTTACAGGCAAGACGATCACCATTGACGTCCAAAGCAC 293165 Query 40749 CGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | |||| | |||| ||| |||| ||||| ||||| || || | |||| Sbjct 293166 TGACACAATAGAGAACG-TAAAGGCAAAGATTCAGGACAAGGAGGGAATACCTTCTGACC 293224 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACG--AGCGCACCCTCAACGACTA 40865 ||||| |||| |||| ||| || || ||||| || || | || ||| ||| ||||| Sbjct 293225 AGCAAAGACTTATCTTCGCCGGAAAGCAGCTTGAGGATGGAAGGACACTTTCA--GACTA 293282 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||||| |||||||| |||| | ||||| ||| Sbjct 293283 CAACATTCAGAAGGAAAGCACGATTCATCTGGTG 293316 >seq2 Length=77616 Score = 131 bits (144), Expect = 2e-25 Identities = 160/214 (75%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| ||||||||||| ||||| || ||||| || |||||| | |||||| || ||| Sbjct 15407 AATGCAGATATTCGTAAAGACGCTTACAGGCAAGACAATCACCATTGACGTCCAAAGCAC 15466 Query 40749 CGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | |||| | |||| ||| |||| ||||| ||||| || || | |||| Sbjct 15467 TGACACAATAGAGAACG-TAAAGGCAAAGATTCAGGACAAGGAGGGAATACCTTCTGACC 15525 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACG--AGCGCACCCTCAACGACTA 40865 ||||| |||| |||| ||| || || ||||| || || | || ||| ||| ||||| Sbjct 15526 AGCAAAGACTTATCTTCGCCGGAAAGCAGCTTGAGGATGGAAGGACACTTTCA--GACTA 15583 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||||| |||||||| |||| | ||||| ||| Sbjct 15584 CAACATTCAGAAGGAAAGCACGATTCATCTGGTG 15617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218929509920