Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20displodere_20[genbank_20GCA_5F001642395.1_202016-05-11] 42 sequences; 3,066,400 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq1 111 2e-19 seq12 96.9 4e-15 seq2 96.9 4e-15 >seq1 Length=651558 Score = 111 bits (122), Expect = 2e-19 Identities = 145/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 42987 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 43046 ||||| ||||| ||||| |||||||| || ||||| | |||| || |||||||| || Sbjct 630389 GTGCTTTCCTTCTGAATGTTGTAATCTGCAAGAGTTCTTCCGTCCTCAAGCTGCTTCCCG 630448 Query 43047 GCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTG 43106 || || || || | ||||||||||| || | || || |||||| |||||| || Sbjct 630449 GCAAAAATAAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTGTCCTGGATTTTGGTCTTC 630508 Query 43107 AGCGTCGCCACCGTGTCGCTCGAT--TCCACATCGACCGTGATGGTTTTGCCCGTTAGCG 43164 | || | ||||||| || || ||||| || | || ||||| ||||| || || | Sbjct 630509 ACAGTGTCAACCGTGT--CTGAATTCTCCACGTCTAAGGTAATGGTCTTGCCTGTGAGTG 630566 Query 43165 TCTTTACAAAGATTTGCAT 43183 ||||||| ||||| ||||| Sbjct 630567 TCTTTACGAAGATCTGCAT 630585 >seq12 Length=514210 Score = 96.9 bits (106), Expect = 4e-15 Identities = 150/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||| ||| | ||||| ||||| ||||| ||||| || | || |||| | || || Sbjct 293316 CACCAGATGAATCGTGCTTTCCTTCTGAATGTTGTAGTCTGAAAGTGTCCTTCCATCCTC 293257 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||||| || ||||| || |||| |||||||| | || | | |||||||||| | Sbjct 293256 AAGCTGCTTTCCGGCGAAGATAAGTCTTTGCTGGTCAGAAGGTATTCCCTCCTTGTCC-T 293198 Query 43094 GATTTTTTGTTTGAGCGT-CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 43152 || | |||| | ||| | | | ||||| | || || || | ||||| || | Sbjct 293197 GAATCTTTGCCTTTACGTTCTCTATTGTGTCAGTGCTTTGGACGTCAATGGTGATCGTCT 293138 Query 43153 TGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 |||| || ||||||||||| || || |||||| Sbjct 293137 TGCCTGTAAGCGTCTTTACGAATATCTGCATT 293106 >seq2 Length=77616 Score = 96.9 bits (106), Expect = 4e-15 Identities = 150/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||| ||| | ||||| ||||| ||||| ||||| || | || |||| | || || Sbjct 15617 CACCAGATGAATCGTGCTTTCCTTCTGAATGTTGTAGTCTGAAAGTGTCCTTCCATCCTC 15558 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||||| || ||||| || |||| |||||||| | || | | |||||||||| | Sbjct 15557 AAGCTGCTTTCCGGCGAAGATAAGTCTTTGCTGGTCAGAAGGTATTCCCTCCTTGTCC-T 15499 Query 43094 GATTTTTTGTTTGAGCGT-CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 43152 || | |||| | ||| | | | ||||| | || || || | ||||| || | Sbjct 15498 GAATCTTTGCCTTTACGTTCTCTATTGTGTCAGTGCTTTGGACGTCAATGGTGATTGTCT 15439 Query 43153 TGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 |||| || ||||||||||| || || |||||| Sbjct 15438 TGCCTGTAAGCGTCTTTACGAATATCTGCATT 15407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571817299795760