Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20displodere_20[genbank_20GCA_5F001642395.1_202016-05-11] 42 sequences; 3,066,400 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq12 100 2e-16 seq2 100 2e-16 seq1 86.0 4e-12 >seq12 Length=514210 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || ||||| |||||||| || | || ||||| ||||| ||||||||||| || Sbjct 293334 TCCTCCCCGGAGCCTGAGCACCAGATGAATCGTGCTTTCCTTCTGAATGTTGTAGTCTGA 293275 Query 34222 CAGCTGACGGT-CGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGG 34280 || || | | | || || | |||||| || ||||| || || | |||||||| | Sbjct 293274 AAG-TGTCCTTCCATCCTCAAGCTGCTTTCCGGCGAAGATAAGTCTTTGCTGGTCAGAAG 293216 Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGA 34340 | | | ||||||||| |||||| ||||| | |||| | || || || || Sbjct 293215 GTATTCCCTCCTTGTCCTGAATCTTTGCCTTTACGTTCTCTATTGTGTCAGTGCTTTGGA 293156 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| | ||||| || ||||| || || || || || || |||||||| Sbjct 293155 CGTCAATGGTGATCGTCTTGCCTGTAAGCGTCTTTACGAATATCTGCAT 293107 >seq2 Length=77616 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || ||||| |||||||| || | || ||||| ||||| ||||||||||| || Sbjct 15635 TCCTCCCCGGAGCCTGAGCACCAGATGAATCGTGCTTTCCTTCTGAATGTTGTAGTCTGA 15576 Query 34222 CAGCTGACGGT-CGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGG 34280 || || | | | || || | |||||| || ||||| || || | |||||||| | Sbjct 15575 AAG-TGTCCTTCCATCCTCAAGCTGCTTTCCGGCGAAGATAAGTCTTTGCTGGTCAGAAG 15517 Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGA 34340 | | | ||||||||| |||||| ||||| | |||| | || || || || Sbjct 15516 GTATTCCCTCCTTGTCCTGAATCTTTGCCTTTACGTTCTCTATTGTGTCAGTGCTTTGGA 15457 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| | ||||| || ||||| || || || || || || |||||||| Sbjct 15456 CGTCAATGGTGATTGTCTTGCCTGTAAGCGTCTTTACGAATATCTGCAT 15408 >seq1 Length=651558 Score = 86.0 bits (94), Expect = 4e-12 Identities = 154/223 (69%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 34172 AGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGG 34231 ||||| ||||| ||||| | || ||||| ||||| |||||||| || | || | Sbjct 630368 AGCCTGAGCACAAGGTGGATGGTGCTTTCCTTCTGAATGTTGTAATCTGCAAGAGTTCTT 630427 Query 34232 TCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCC 34291 |||| || | |||||| || || ||||| |||| |||||||||| || | || || Sbjct 630428 CCGTCCTCAAGCTGCTTCCCGGCAAAAATAAGCCTCTGCTGGTCGGGAGGGATGCCTTCT 630487 Query 34292 TTGTCGGCTATCTTTTG--CTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCG 34349 ||||| || ||||| ||| | | | | | || || | || ||||| | | Sbjct 630488 TTGTC--CTGGATTTTGGTCTTCACAGTGTCAACCGTGTCTGAATTCTCCACGTCTAAGG 630545 Query 34350 TGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGC 34392 | ||||| ||||| ||||| || || || ||||||||||| || Sbjct 630546 TAATGGTCTTGCCTGTGAGTGTCTTTACGAAGATCTGCATGGC 630588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323071834627520