Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20displodere_20[genbank_20GCA_5F001642395.1_202016-05-11] 42 sequences; 3,066,400 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq4 194 2e-44 >seq4 Length=66353 Score = 194 bits (214), Expect = 2e-44 Identities = 385/565 (68%), Gaps = 4/565 (1%) Strand=Plus/Minus Query 16235 CAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGA 16294 |||||||| || ||||| | |||||||| | || || | |||||| || || || || Sbjct 59540 CAAGCAAAGTCGCAATGAAGGCCTTCGTCTCGGCTGATAAGCTCGTTAGAGAAGGTTAGC 59481 Query 16295 CCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAAT 16354 || ||||| ||||||||||| || | ||| || ||||| |||||||| || || ||||| Sbjct 59480 CCAGGCATAAGTCCTCGTTTCTTGAGCCAGAAGATAGCTGCAAATGACCCGGAGAAGAAG 59421 Query 16355 ATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttct 16414 || |||||||| |||||| || || | ||||| | | | || | | | Sbjct 59420 ATGCCTTCAACACAGGCAAAGGCCACTAGCCGCTCTGCAAAGCTGGCCTTAGCATCTGAT 59361 Query 16415 atccattttttagcccaatttg-ctttttgtttAACACAGTTCATGTTCTCTATTGCATT 16473 ||||| ||||| | || ||| || |||| || | |||||||| || ||||| Sbjct 59360 ATCCACCGCAGCGCCCAGTCTGCCTTCTTTTTTATGACCG-GGATGTTCTCAATGGCATT 59302 Query 16474 AAATAAATAAtttttttCTTTGCTATCT-AAAATATAAGTATCTATTAGTAAACTATACA 16532 ||| || || | ||||| | || || || || || || || |||| |||| Sbjct 59301 AAACAAGAAAGTCTTTTCGCT-CTGGCTCTTGATGTACGTGTCAATGAGTAGGGAGTACA 59243 Query 16533 TTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATA 16592 | || | || || ||||| || ||||| || || || ||||||| |||||| | Sbjct 59242 TCTCAGCGTGGATGTTCTCAATCATAATCTGGAAGCCGTAGAAGCATCGAGCTTCACTGA 59183 Query 16593 TTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTG 16652 |||| || |||||| ||||||||| | | |||||| ||||| ||||| || || | Sbjct 59182 TTTGCACCTCAGAGGCAAACCTTTCAACCAGGTTTTCATTAACAATTCCGTCAGAGGCGG 59123 Query 16653 CAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAGT 16712 |||| || || || | || ||| || | | ||||||| | ||| || ||||| Sbjct 59122 CAAAGAAGGCGAGGACGTAGGAAATGAAGTGTCTTTCGTTGGCGTTAAGCTTCTCCCAGT 59063 Query 16713 CAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTT 16772 ||| | ||| || | ||||| |||||| | ||||| ||| ||| || || |||| Sbjct 59062 CAGCCATGTCTCTTCCAAGGTCGACTTCTTCTGCGGTCCAGAAACTAGCCACTGCGTTTT 59003 Query 16773 TATACATTTTCCATATGTCTTCGTA 16797 | ||||| ||||| ||||| | ||| Sbjct 59002 TGTACATGTTCCAGATGTCGTAGTA 58978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462511757181200