Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20displodere_20[genbank_20GCA_5F001642395.1_202016-05-11] 42 sequences; 3,066,400 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1 98.7 8e-16 seq12 84.2 2e-11 >seq1 Length=651558 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/201 (72%), Gaps = 6/201 (3%) Strand=Plus/Plus Query 45140 GTGCTCTCCTTCTGAATGTTGTAGTCGTTCA---GTTGGCGATCGTCGTCCAGTTGTTTT 45196 ||||| ||||||||||||||||| || | || ||| | |||| || || || || Sbjct 630389 GTGCTTTCCTTCTGAATGTTGTAATC-TGCAAGAGTT--CTTCCGTCCTCAAGCTGCTTC 630445 Query 45197 CCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGC 45256 ||||| || || | || ||| ||||||||||| | || || |||||| ||||| | Sbjct 630446 CCGGCAAAAATAAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTGTCCTGGATTTTGGTC 630505 Query 45257 TTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGA 45316 || || | | || |||| | |||||| || | |||||| |||||||| || || Sbjct 630506 TTCACAGTGTCAACCGTGTCTGAATTCTCCACGTCTAAGGTAATGGTCTTGCCTGTGAGT 630565 Query 45317 GTCTTCACAAAGATTTGCATG 45337 ||||| || ||||| |||||| Sbjct 630566 GTCTTTACGAAGATCTGCATG 630586 >seq12 Length=514210 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| || | |||||| |||||||||||||||||||| ||| | | || || Sbjct 293315 ACCAGATGAATCGTGCTTTCCTTCTGAATGTTGTAGTCTGAAAGTGTCCTTCCATCCTCA 293256 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||||||||| || | | || ||||| | ||| | |||||||||||| | Sbjct 293255 AGCTGCTTTCCGGCGAAGATAAGTCTTTGCTGGTCAGAAGGTATTCCCTCCTTGTCCTGA 293196 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| ||| || | | | |||| | | || || | ||| ||||||||| Sbjct 293195 ATCTTTGCCTTTACGTTCTCTATTGTGTCAGTGCTTTGGACGTCAATGGTGATCGTCTTG 293136 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || ||||| || || || ||||| Sbjct 293135 CCTGTAAGCGTCTTTACGAATATCTGCAT 293107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395074997770882