Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20displodere_20[genbank_20GCA_5F001642395.1_202016-05-11] 42 sequences; 3,066,400 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq4 179 4e-40 >seq4 Length=66353 Score = 179 bits (198), Expect = 4e-40 Identities = 375/552 (68%), Gaps = 14/552 (3%) Strand=Plus/Minus Query 14204 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 14263 || ||||| || ||||||||||| || |||| || ||||| ||||| || || |||| Sbjct 59540 CAAGCAAAGTCGCAATGAAGGCCTTCGTCTCGGCTGATAAGCTCGTTAGAGAAGGTTAGC 59481 Query 14264 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAAT 14323 || ||||| | ||||||||| || | ||| || || || || ||||| ||||| ||||| Sbjct 59480 CCAGGCATAAGTCCTCGTTTCTTGAGCCAGAAGATAGCTGCAAATGACCCGGAGAAGAAG 59421 Query 14324 ATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT 14383 || || ||||| ||||| || | || || ||| |||| || || | ||| Sbjct 59420 ATGCCTTCAACACAGGCAAAGGCCACTAGCCGCTCTGCAAAGCTGGCCTTAGCATCTGAT 59361 Query 14384 ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTA 14443 ||||| ||||| || | || ||||| || | || | ||||| |||||| Sbjct 59360 ATCCACCGCAGCGCCCAGTCTGCCTTCTTTTTTATGACCGGGATGTTCTCAATGGCATTA 59301 Query 14444 AATA--AATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACA 14501 || | || || ||| || | | |||| ||||| || ||||| |||| | |||| Sbjct 59300 AACAAGAAAGTCTTTTCGCTCTGGCTCTTG--ATGTACGTGTCAATGAGTAGGGAGTACA 59243 Query 14502 TTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTT--CTGA 14559 | |||| ||| ||||| || || ||||| || || || || |||| ||||| |||| Sbjct 59242 TCTCAGCGTGGATGTTCTCAATCATAATCTGGAAGCCGTAGAAGCATCGAGCTTCACTGA 59183 Query 14560 CCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGC 14619 ||| ||||| ||| ||| ||||| ||| ||||||||||| || || ||| || Sbjct 59182 --TTTGCACCTCAGAGGCAAACCTTTCAACCAGGTTTTCATTAACAATTCCGTCAGAGGC 59125 Query 14620 TGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATT---GCTGAGTTTTTT 14676 ||||| || || | | || ||| |||| | || ||| || | | || || | Sbjct 59124 GGCAAAGAAGGCGAGGACGTAGGAAATGAAGTGT--CT-TTCGTTGGCGTTAAGCTTCTC 59068 Query 14677 CCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGC 14736 ||| || || | || | ||| || ||||| || | ||||| |||||||| || || Sbjct 59067 CCAGTCAGCCATGTCTCTTCCAAGGTCGACTTCTTCTGCGGTCCAGAAACTAGCCACTGC 59008 Query 14737 TTTTTTATACAT 14748 ||||| ||||| Sbjct 59007 GTTTTTGTACAT 58996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482345346768560