Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20displodere_20[genbank_20GCA_5F001642395.1_202016-05-11] 42 sequences; 3,066,400 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq4 178 1e-39 seq34 150 2e-31 seq1 96.9 3e-15 >seq4 Length=66353 Score = 178 bits (196), Expect = 1e-39 Identities = 564/864 (65%), Gaps = 18/864 (2%) Strand=Plus/Plus Query 57536 TAGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGA 57595 |||||||||||| ||||| | | || ||||| ||||||||||||||||| |||| Sbjct 58953 TAGATTTGTCATCTTTCCAGTGCAGTACTACGACATCTGGAACATGTACAAAAACGCAGT 59012 Query 57596 AGCATCGTTT-TGGACCGTCGAAGAAGTAGACCTGTCTAAG-GATCTGAGCGATTGGGAT 57653 || | |||| ||||||| |||||||| ||||| | ||| || || || ||||| Sbjct 59013 GGC-TAGTTTCTGGACCGCAGAAGAAGTCGACCT-TGGAAGAGACATGGCTGACTGGGAG 59070 Query 57654 TCCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCC 57713 || || | || ||| | || ||| |||| | || || || ||||| || Sbjct 59071 AAGCTTAACGCCAACGAAAGACACTTCATTTCCTACGTCCTCGCCTTCTTTGCCGCCTCT 59130 Query 57714 GATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAG 57773 || || |||||||| || || |||| ||||| ||| | || |||||| | | || Sbjct 59131 GACGGAATTGTTAATGAAAACCTGGTTGAAAGGTTTGCCTCTGAGGTGCAAATCAGTGAA 59190 Query 57774 GCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCG 57833 || ||||||| ||||| || || | ||||| ||| | || | || ||||| || Sbjct 59191 GCTCGATGCTTCTACGGCTTCCAGATTATGATTGAGAACATCCACGCTGAGATGTACTCC 59250 Query 57834 CTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGACTGTTCAACGCGATC 57893 |||||||| || |||||| | ||| | | ||| || | |||| || || || Sbjct 59251 CTACTCATTGACACGTACATCAAGAGCCAGAGCGAAAAGACTTTCTTGTTTAATGCCATT 59310 Query 57894 GAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCC 57953 || | || || | || ||||||||||| ||| | | |||||| | || Sbjct 59311 GAGAACATCCCGGTCATAAAAAAGAAGGCAGACTGGGCGCTGCGGTGGATATCAGATGCT 59370 Query 57954 ACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCG 58013 | ||||| || || ||| ||||| | || || ||| || ||||| || ||||| || Sbjct 59371 AAGGCCAGCTTTGCAGAGCGGCTAGTGGCCTTTGCCTGTGTTGAAGGCATCTTCTTCTCC 59430 Query 58014 GGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTT 58073 || ||||| || || || ||| | |||||||| || || ||||| || || || || Sbjct 59431 GGGTCATTTGCAGCTATCTTCTGGCTCAAGAAACGAGGACTTATGCCTGGGCTAACCTTC 59490 Query 58074 AGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTAC 58133 |||||| | || || ||||| || || ||| || ||||| |||||| | || Sbjct 59491 TCTAACGAGCTTATCAGCCGAGACGAAGGCCTTCATTGCGACTTTGCTTGCCTACTACAC 59550 Query 58134 TCTCACATTGTCAATAAACCGACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTC 58193 || ||| | || ||| | | | ||| ||| | | || | ||||| || Sbjct 59551 TCGCACCT----AAACAAC--AAGTGCGATAAAATCAAGAAAATCGTTGAAGAGGCCGTT 59604 Query 58194 GCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAAT 58253 | || || || ||||| | ||| || || || || | | | || || || Sbjct 59605 GTAATTGAGAAAGAGTTCTTATGCGAGGCTCTCCCCGTCTCTCTCATTGGCATCAATGTC 59664 Query 58254 GATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGGA 58313 ||| |||| ||||||||||||||||||| ||| | ||| | ||| | |||| Sbjct 59665 GATACTATGTGCCAGTACATTGAGTTTGTTGCTGACCGGCTTCTTCTC---TCGCTTGGC 59721 Query 58314 GAGCGTCA---TTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCT-CGA 58369 |||| | |||||| | | || || || || |||||| | |||||||| ||| Sbjct 59722 GAGCCAAAGATATACAACGCCCAGAACCCATTCGACTTTATGGAGTACATCTCGCTGCGA 59781 Query 58370 GGGCAAGACAAACTTTTTCGAAAA 58393 || ||| | ||||| ||||| || Sbjct 59782 -GGAAAGTCCAACTTCTTCGAGAA 59804 >seq34 Length=240578 Score = 150 bits (166), Expect = 2e-31 Identities = 931/1480 (63%), Gaps = 33/1480 (2%) Strand=Plus/Plus Query 22104 TCTTGTCCACTGTAAACTGTAT-GGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATG 22162 |||| ||||||||||||| || || | ||| ||| || ||||| | || || ||| Sbjct 162230 TCTTATCCACTGTAAACTTGATCGGTGCTTG-GGCAGGCTTGGTTCTTAGGTAGTACGCC 162288 Query 22163 CCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTC 22222 ||||| ||||| ||| |||||||| | || || || || || | | || | | Sbjct 162289 CCCGTTTTCAGCCCCTTCTTCCACCCATAGAAGTGCATGCTGGTAAGCTGGGCAAAGGTT 162348 Query 22223 GGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCG 22282 ||| | || | || | |||||| ||||| || | ||| ||||| || |||| Sbjct 162349 GGCGCTGAGAGGTGAATGTTCATCGACTGGCTCTGGTCCACAAAGGCTCCGCGTGCGGCA 162408 Query 22283 GCCATATTTATCAATG---TACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTG 22339 ||| | |||| | | || | || ||||| || || ||||| || || || Sbjct 162409 GCCTGGTCAATCACGGCCTTTTGCTTG---ATCTCCCAGACCGTTTTGTAGAGCTGTTTG 162465 Query 22340 ATCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTT 22399 | | ||||| | ||| | ||||| || || | | || || | ||| || Sbjct 162466 AGGTGGTCGGGTATGCTTGGGATGTTTTGGACAGATCCTTCGTGGTCAATCACCAAGTTC 162525 Query 22400 TTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACC 22459 || ||| | | ||| | || | | | || ||| ||||| || | | || || Sbjct 162526 TTCATCTCAGGGCCCCAGAGCCCCAAAGAAGCCAGATCATTGACAAGGTATGGATTAACA 162585 Query 22460 ACTTGAAACTCGCCGGACAAGACG--CGGCGTTGGTAAATGTTGGATGTGAACGGTTCGA 22517 || || ||||| ||||| ||| || | || ||| |||||| |||||| ||| | Sbjct 162586 ACCTGGAACTCCCCGGA-AAG-CGTTCTTCGGGTGTAGATGTTGCTCGTGAACCCTTCAA 162643 Query 22518 AAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTA 22577 | | || ||| || || ||||| | ||| || || || |||||| |||| | ||| | Sbjct 162644 AGCACTCGTTGAACCCGAGGATCTGGGAGGTGGAGGCCGTAGGCATCAGCGCAACCAGAA 162703 Query 22578 GCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGAT 22637 | ||| |||| |||||| | | ||||| ||||||| || ||||| |||| | Sbjct 162704 GACTGTTCCTCAGCCCGTGCCTGGCCATTTTCTCCTTGAGCTCCGCCCAGTTCCACCG-- 162761 Query 22638 CGGAC--GGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCT 22695 || || || | || || ||| | ||||| |||| | ||| || || || || Sbjct 162762 CGCACTTGGAGAAACGTT---CCAGAGGTCGTACTGCAGGATGCCCTTGCTGGCTGGACT 162818 Query 22696 GCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCG-CAGCTCGCCTCCAACG 22754 ||| | ||| || |||||||| || | || || || || || ||| | || ||||| Sbjct 162819 GCCCTGGTAGGTCTCGTACGGCCCGTGGATGGCTGCCAGCTCAACAGA--GGCTTCAACG 162876 Query 22755 CGCCGTAA-TATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTCG 22813 || || || || || || ||||| | ||| | | |||| | |||| || Sbjct 162877 GCCCCAAAGTAGATGGTTTCAAAGATCTCAACGTTAAGCCTGCCGGCTTCTTCGCTCTCA 162936 Query 22814 TACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGT 22873 | ||||| ||||| | | | | | ||||||| |||||||| || | |||||||| Sbjct 162937 AAGGGCATCTGCATCCTGATGTAGACATCCGCCAGGCCCTGAACTCCAAGGCCGATCGGC 162996 Query 22874 CGGTTTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTT 22933 |||| | ||||| || | ||| | || ||| || ||| || || Sbjct 162997 CGGTGCCTTAGATTAGAGTGCCGCGACTCCTCAAGGGGGTACTTGTTAACATCAATGATT 163056 Query 22934 CTGTTCAAGTTTCTGGTCACAATTTTC---GTTA---TNNNNNNNNNNNNNTCAAAGTCG 22987 |||||| |||| | |||| || ||| | ||||| | Sbjct 163057 TTGTTCAGGTTTTTAACAACAACCTTAACGGTTTCTTTCAACTTTTGGAAGTCAAACTGC 163116 Query 22988 TAAACG-CCCGATTGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGC 23046 || || ||| | | | | || ||| | || | || || || ||||| || || || Sbjct 163117 AAAGCGTCCCCCTCGGAAATGAAGGTTGGTAGCGCC-ATGGACGCCAGATTACAAACTGC 163175 Query 23047 CACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGT 23106 | ||| ||| | || |||| || || || | ||| |||||||| | ||| || || Sbjct 163176 TATCTCCTCTGGGCTGGTAAACTCAACTATCTCTGCACAAAGATTGCTTCCCTTGATAGT 163235 Query 23107 GCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGT 23166 || | || |||||||||| || || ||||| ||||||||||| ||||| ||| Sbjct 163236 CCCAAGGTTCTTCTGGTTGCTCTTCCGGTTGCAGCTGTCCTTGTAGAGGATGTAGGGCAC 163295 Query 23167 GCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCG 23226 ||||||||| | || | ||| | || ||| | || | || ||||| || Sbjct 163296 GCCCGTCTCAATCTCAGCCTCCAGAATGAACTTCCAAAGCTTCCGCGCCGAAACACTCCG 163355 Query 23227 CACGTACCTG-CCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAAC 23285 | || || | || ||| ||||||| | | ||||| || |||| ||| | || ||| Sbjct 163356 C-CGGCCCAGACCCTCTCGCTCGTACCTCTCATACAAAGCCACAAACTCGTCCCCATAAA 163414 Query 23286 AGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAA 23345 ||| ||||| | || |||||| | || ||||| |||| | || | Sbjct 163415 CCTCGTGAAGGCCCTTGGCCTGGTCCGGACAGAAAAGCGTCCACTCCAAGTCGTCCTCCA 163474 Query 23346 CGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCT 23405 | || ||| || | ||| |||||||| || || ||||| ||||| | | || Sbjct 163475 CCCGCTGCATGAACAAATCGGGTATCCACAGCGCCAGGAACAAACTCCGGGCTCTGAGCT 163534 Query 23406 CCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCT 23465 | |||||||| ||||| || ||| |||| ||||| || || || | |||||||||| Sbjct 163535 CGTCTTTGCCCGTGTTTTTCCTCAGCTCCAGGAAGTCAAAGACATCGGGGTGCCACGGCT 163594 Query 23466 CGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCG 23525 | ||||| || ||| | ||| || | ||| ||||| ||||| || || || | | | Sbjct 163595 CCAGGTAGACCACAATGGAGCCTGGCCGCTTGTTGCCCCCCTGGTCCACATACCTTGAGG 163654 Query 23526 TGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGA 23565 | | | || | ||||||||||| || ||||| || Sbjct 163655 TCGCATCAAAGACCCGAAGCATCGGCACAAGCCCGTTCGA 163694 >seq1 Length=651558 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||||||||| || |||||||| || || ||| | ||||| || || Sbjct 630586 CATGCAGATCTTCGTAAAGACACTCACAGGCAAGACCATTACCTTAGACGTGGAGAATTC 630527 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| || || || || || | ||| |||||| |||||| | || |||||||| Sbjct 630526 AGACACGGTTGACACTGTGAAGACCAAAATCCAGGACAAAGAAGGCATCCCTCCCGACCA 630467 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || || || || ||| | || ||| | ||| | ||||| || Sbjct 630466 GCAGAGGCTTATTTTTGCCGGGAAGCAGCTTGAGGACGGAAGAACTCTTGCAGATTACAA 630407 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||| || ||| || | || || || || || || ||||| || Sbjct 630406 CATTCAGAAGGAAAGCACCATCCACCTTGTGCTCAGGCTCAGGGGAGG 630359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766165972640