Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20displodere_20[genbank_20GCA_5F001642395.1_202016-05-11] 42 sequences; 3,066,400 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1 87.8 2e-12 seq12 86.0 6e-12 seq2 82.4 8e-11 >seq1 Length=651558 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 139574 TCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAG 139633 || || |||||||| ||||| | || || ||| || ||||| || || ||| | Sbjct 630395 TCCTTCTGAATGTTGTAATCTGCAAGAGTTCTTCCGTCCTCAAGCTGCTTCCCGGCAAAA 630454 Query 139634 ATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT 139693 || || | ||||| |||||||| |||||||||||||| || |||| || || | || Sbjct 630455 ATAAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTGTC-CTGGATTTTGGTCTTCACAGT 630513 Query 139694 -TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTAC 139752 || || ||||| | |||||| || | ||| | |||||||| || | || ||||| Sbjct 630514 GTCAACCGTGTCTGAATTCTCCACGTCTAAGGTAATGGTCTTGCCTGTGAGTGTCTTTAC 630573 Query 139753 GAATATTTGCATAGC 139767 ||| || ||||| || Sbjct 630574 GAAGATCTGCATGGC 630588 >seq12 Length=514210 Score = 86.0 bits (94), Expect = 6e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||||||| || || |||||||| || || | ||| || || || ||||| Sbjct 293309 TGAATCGTGCTTTCCTTCTGAATGTTGTAGTCTGAAAGTGTCCTTCCATCCTCAAGCTGC 293250 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || || || |||| || | |||||| || | |||||| || || ||||| ||| | || Sbjct 293249 TTTCCGGCGAAGATAAGTCTTTGCTGGTCAGAAGGTATTCCCTCCTTGTCC-TGAATCTT 293191 Query 139682 TGT-TTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 || |||| | || | |||||| ||| | || |||| ||| | ||||||||| || Sbjct 293190 TGCCTTTACGTTCTCTATTGTGTCAGTGCTTTGGACGTCAATGGTGATCGTCTTGCCTGT 293131 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 | ||| ||||||||||| ||||| Sbjct 293130 AAGCGTCTTTACGAATATCTGCAT 293107 >seq2 Length=77616 Score = 82.4 bits (90), Expect = 8e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||||||| || || |||||||| || || | ||| || || || ||||| Sbjct 15610 TGAATCGTGCTTTCCTTCTGAATGTTGTAGTCTGAAAGTGTCCTTCCATCCTCAAGCTGC 15551 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || || || |||| || | |||||| || | |||||| || || ||||| ||| | || Sbjct 15550 TTTCCGGCGAAGATAAGTCTTTGCTGGTCAGAAGGTATTCCCTCCTTGTCC-TGAATCTT 15492 Query 139682 TGT-TTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 || |||| | || | |||||| ||| | || |||| ||| | |||||||| || Sbjct 15491 TGCCTTTACGTTCTCTATTGTGTCAGTGCTTTGGACGTCAATGGTGATTGTCTTGCCTGT 15432 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 | ||| ||||||||||| ||||| Sbjct 15431 AAGCGTCTTTACGAATATCTGCAT 15408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496063739566400