Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20displodere_20[genbank_20GCA_5F001642395.1_202016-05-11] 42 sequences; 3,066,400 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq4 224 1e-53 >seq4 Length=66353 Score = 224 bits (248), Expect = 1e-53 Identities = 407/591 (69%), Gaps = 7/591 (1%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || || || ||||| || || || ||||||| || || || ||||| || || || || Sbjct 59540 CAAGCAAAGTCGCAATGAAGGCCTTCGTCTCGGCTGATAAGCTCGTTAGAGAAGGTTAGC 59481 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 || ||||| || || || || || ||||| || || | ||||||||||| || |||||| Sbjct 59480 CCAGGCATAAGTCCTCGTTTCTTGAGCCAGAAGATAGCTGCAAATGACCCGGAGAAGAAG 59421 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGT--- 50136 || ||||| || ||||||||| || || | |||| || | ||||| | ||| | Sbjct 59420 ATGCCTTCAACACAGGCAAAGGCCACTAGCCGCTCTGCAAAGCTGGCCTTAGCATCTGAT 59361 Query 50137 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 50196 |||||| | ||||| || ||||||||||||| || || | || ||||||||| Sbjct 59360 ATCCACCGCAGCGCCCAGTCTGCCTTCTTTTTTATGACCGGGATGTTCTCAATGGCATTA 59301 Query 50197 AAGA-GATAGtttttttCATTACTATCT-TTAACATAAGTATCGATCAAAAGACTATACA 50254 || | || ||| |||| | || || || | || || || || | || |||| Sbjct 59300 AACAAGAAAGTCTTTTCGCT--CTGGCTCTTGATGTACGTGTCAATGAGTAGGGAGTACA 59243 Query 50255 TTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAA 50314 | || | || ||||| ||||| ||||| || |||||||| |||| ||| || | | Sbjct 59242 TCTCAGCGTGGATGTTCTCAATCATAATCTGGAAGCCGTAGAAGCATCGAGCTTCACTGA 59183 Query 50315 TCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTG 50374 | ||||| || | ||| | |||| | | |||||||| || ||||||||| ||| | Sbjct 59182 TTTGCACCTCAGAGGCAAACCTTTCAACCAGGTTTTCATTAACAATTCCGTCAGAGGCGG 59123 Query 50375 CAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAAT 50434 |||| || || | || | || || ||| ||||||||| | || || | ||| | Sbjct 59122 CAAAGAAGGCGAGGACGTAGGAAATGAAGTGTCTTTCGTTGGCGTTAAGCTTCTCCCAGT 59063 Query 50435 CATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTT 50494 || || ||| | | || |||||||| | ||||| || ||| |||| |||| Sbjct 59062 CAGCCATGTCTCTTCCAAGGTCGACTTCTTCTGCGGTCCAGAAACTAGCCACTGCGTTTT 59003 Query 50495 TATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTAT 50545 | ||||| ||||||||||| | || || | ||| || || |||||||||| Sbjct 59002 TGTACATGTTCCAGATGTCGTAGTACTGCACTGGAAAGATGACAAATCTAT 58952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268422908880