Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20displodere_20[genbank_20GCA_5F001642395.1_202016-05-11] 42 sequences; 3,066,400 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq4 185 8e-42 >seq4 Length=66353 Score = 185 bits (204), Expect = 8e-42 Identities = 375/550 (68%), Gaps = 10/550 (2%) Strand=Plus/Minus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 || ||||| || ||||||||||| || |||| || ||||| ||||| || || |||| Sbjct 59540 CAAGCAAAGTCGCAATGAAGGCCTTCGTCTCGGCTGATAAGCTCGTTAGAGAAGGTTAGC 59481 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAAT 13991 || ||||| | ||||||||| || | ||| || || || |||||||||||||| ||||| Sbjct 59480 CCAGGCATAAGTCCTCGTTTCTTGAGCCAGAAGATAGCTGCAAATGACCCGGAGAAGAAG 59421 Query 13992 ATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT 14051 || || ||||| ||||| || | || || ||| |||| || || | ||| Sbjct 59420 ATGCCTTCAACACAGGCAAAGGCCACTAGCCGCTCTGCAAAGCTGGCCTTAGCATCTGAT 59361 Query 14052 ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTA 14111 ||||| ||||| || | || ||||| || | || | ||||| |||||| Sbjct 59360 ATCCACCGCAGCGCCCAGTCTGCCTTCTTTTTTATGACCGGGATGTTCTCAATGGCATTA 59301 Query 14112 AATAA-ATATTC-CTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACA 14169 || || | | || ||| || | | |||| ||||| || ||||| |||| | |||| Sbjct 59300 AACAAGAAAGTCTTTTCGCTCTGGCTCTTG--ATGTACGTGTCAATGAGTAGGGAGTACA 59243 Query 14170 TTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACC 14229 | |||| ||| ||||| || || ||||| || || || ||||||| |||||| Sbjct 59242 TCTCAGCGTGGATGTTCTCAATCATAATCTGGAAGCCGTAGAAGCATCGAGCTTCACTGA 59183 Query 14230 ATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTG 14289 ||| || || ||| ||| ||||| ||| ||||||||||| || || ||| || | Sbjct 59182 TTTGCACCTCAGAGGCAAACCTTTCAACCAGGTTTTCATTAACAATTCCGTCAGAGGCGG 59123 Query 14290 CAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATT---GTTGAGTTTTTTCC 14346 |||| || || | | || ||| |||| | || ||| || ||| || || | || Sbjct 59122 CAAAGAAGGCGAGGACGTAGGAAATGAAGTGT--CT-TTCGTTGGCGTTAAGCTTCTCCC 59066 Query 14347 AATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTT 14406 | || | | || | ||| || ||||| || | ||||| |||||||| || || | Sbjct 59065 AGTCAGCCATGTCTCTTCCAAGGTCGACTTCTTCTGCGGTCCAGAAACTAGCCACTGCGT 59006 Query 14407 TTTTATACAT 14416 |||| ||||| Sbjct 59005 TTTTGTACAT 58996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479727748142800