Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20displodere_20[genbank_20GCA_5F001642395.1_202016-05-11] 42 sequences; 3,066,400 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq4 170 3e-37 >seq4 Length=66353 Score = 170 bits (188), Expect = 3e-37 Identities = 397/592 (67%), Gaps = 9/592 (2%) Strand=Plus/Minus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || || || ||||| || || || || |||| || || | ||||| || || || || Sbjct 59540 CAAGCAAAGTCGCAATGAAGGCCTTCGTCTCGGCTGATAAGCTCGTTAGAGAAGGTTAGC 59481 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184 || ||||| || || || || || ||||| || |||| |||||||| || || |||||| Sbjct 59480 CCAGGCATAAGTCCTCGTTTCTTGAGCCAGAAGATAGCTGCAAATGACCCGGAGAAGAAG 59421 Query 42185 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGT--- 42241 || ||||| || |||||||| | || | |||| || | | ||| | ||| | Sbjct 59420 ATGCCTTCAACACAGGCAAAGGCCACTAGCCGCTCTGCAAAGCTGGCCTTAGCATCTGAT 59361 Query 42242 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 42301 |||||| | ||||| || ||||||||||||| || || | || ||||||||| Sbjct 59360 ATCCACCGCAGCGCCCAGTCTGCCTTCTTTTTTATGACCGGGATGTTCTCAATGGCATTA 59301 Query 42302 AA-GAGATAGtttttttCATTACTATCT-TTAACATATGTATCGATCAAAAGACTATACA 42359 || ||| ||| |||| | || || || | || || || || | || |||| Sbjct 59300 AACAAGAAAGTCTTTTCGCT--CTGGCTCTTGATGTACGTGTCAATGAGTAGGGAGTACA 59243 Query 42360 TTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAA 42419 | || | || ||||| ||||| ||||| || |||||||| |||| || || | | Sbjct 59242 TCTCAGCGTGGATGTTCTCAATCATAATCTGGAAGCCGTAGAAGCATCGAGCTTCACTGA 59183 Query 42420 CCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTG 42479 || || || | ||| | |||| | | ||||| || || ||||||||| ||| | Sbjct 59182 TTTGCACCTCAGAGGCAAACCTTTCAACCAGGTTTTCATTAACAATTCCGTCAGAGGCGG 59123 Query 42480 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAA-TTTATTCCAA 42538 |||| || || | || | || || | | |||||| || ||||| || | ||| Sbjct 59122 CAAAGAAGGCGAGGACGTAGGAAATGAAGTGTCTTTCGT-TGGCGTTAAGCTTCTCCCAG 59064 Query 42539 TCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTT 42598 ||| || ||| | | || ||||||||| | ||||| || || |||| ||| Sbjct 59063 TCAGCCATGTCTCTTCCAAGGTCGACTTCTTCTGCGGTCCAGAAACTAGCCACTGCGTTT 59004 Query 42599 TTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTAT 42650 || ||||| |||||||| || | || || | ||| || || |||||||||| Sbjct 59003 TTGTACATGTTCCAGATGTCGTAGTACTGCACTGGAAAGATGACAAATCTAT 58952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671138847651920