Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20displodere_20[genbank_20GCA_5F001642395.1_202016-05-11] 42 sequences; 3,066,400 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq4 196 7e-45 seq34 113 7e-20 >seq4 Length=66353 Score = 196 bits (216), Expect = 7e-45 Identities = 590/895 (66%), Gaps = 36/895 (4%) Strand=Plus/Plus Query 124985 TAGATTTACCCTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCA 125044 ||||||| | | ||||| | ||| | ||||| ||| | ||||||||||| || Sbjct 58953 TAGATTTGTCATCTTTCCAGTGCAGTACTACGACATCTGGAACATGTACAAAAACGCAGT 59012 Query 125045 GGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAG-GACCTGTACGATTGGGAGA 125103 ||| || ||||| | ||||| ||||| || | ||| ||| || || ||||||| Sbjct 59013 GGCTAGTTTCTGGACCGCAGAAGAAGTCGACCT-TGGAAGAGACATGGCTGACTGGGAGA 59071 Query 125104 CTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCT 125163 | || || ||| || || | || || || || | | ||||||||||||| || Sbjct 59072 AGC--TTAACGCCAAC-GAAAGACACTTCATTTCCTACGTCCTCGCCTTCTTTGCCGCCT 59128 Query 125164 CCGATGGAATCGTCAACGACAATCTG-TTGACACGATTCTCTCAAGAGTTGACCATTCCA 125222 | || ||||| || || || || ||| |||| | | || ||| ||| || || || Sbjct 59129 CTGACGGAATTGTTAATGAAAACCTGGTTGAAAGGTTTGCCTCT-GAGGTGCAAAT--CA 59185 Query 125223 GAGGTG-TCG-TGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGT 125280 | | | ||| ||||| ||||| ||||| || |||||||||||| | ||| | || |||| Sbjct 59186 GTGAAGCTCGATGCTTCTACGGCTTCCAGATTATGATTGAGAACATCCACGCTGAGATGT 59245 Query 125281 ACTCTACACTGATTGACATGTACATTCGCGATCCGCAACGTAAACACATGCTC-TTTAAC 125339 |||| ||| ||||||| |||||| | || || | || ||| || | || ||||| Sbjct 59246 ACTCCCTACTCATTGACACGTACAT-CAAGAGCCAGAGCGAAAAGACTTTCTTGTTTAAT 59304 Query 125340 GCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGAT 125399 || || || | | ||| ||| || ||||| | |||| | | |||||||| Sbjct 59305 GCCATTGAGAACATCCCGGTCATAAAAAAGAAGGCAGACTGGGCGCTGCGGTGGATATCA 59364 Query 125400 GACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTC 125459 || | ||| | | || || | || ||||| || ||| || || ||||||||| Sbjct 59365 GATGCTAAGGCCAGCTTTGCAGAGCGGCTAGTGGCCTTTGCCTGTGTTGAAGGCATCTTC 59424 Query 125460 TTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTG 125519 || || || ||||| || ||||| ||||||||||| || ||||| ||||| || || Sbjct 59425 TTCTCCGGGTCATTTGCAGCTATCTTCTGGCTCAAGAAACGAGGACTTATGCCTGGGCTA 59484 Query 125520 ACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTA 125579 || | ||||||| |||| |||||||| ||||| || || |||||||| ||| Sbjct 59485 ACCTTCTCTAACGAGCTTATCAGCCGAGACGAAGGCCTTCATTGCGACTTTGCTTGCCTA 59544 Query 125580 CT-GTTTCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACAT 125638 || ||||| ||| | ||| ||||| ||| ||| || || Sbjct 59545 CTACACTCGCACCTA----AACAACAAGT---------GCGATAAAA---TCAAGAAAAT 59588 Query 125639 TGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCAT 125698 || || ||||| || || ||||||| || ||| | || || ||| | Sbjct 59589 CGTTGAAGAGGCCGTTGTAATTGAGAAAGAGTTCTTATGCGAGGCTCTCCCCGTCTCTCT 59648 Query 125699 GATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACT 125758 |||||||| || | | |||||| ||||||| |||||||| || || || || || Sbjct 59649 CATTGGCATCAATGTCGATACTATGTGCCAGTACATTGAGTTTGTTGCTGACCGGCTTCT 59708 Query 125759 GTACGAGTTGATTGGC---CGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGAC 125815 | | | ||||| | ||||| ||||||||| |||| || || || || ||| Sbjct 59709 TCTC---TCGCTTGGCGAGCCAAAGATATACAACGCCCAGAACCCATTCGACTTTATGGA 59765 Query 125816 CAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 ||| || || || ||| ||||||| |||||||||| |||| |||||| Sbjct 59766 GTACATCTCGCTGCGAGGAAAGTCCAACTTCTTCGAGAAGAGGGTCTCTGAGTAC 59820 >seq34 Length=240578 Score = 113 bits (124), Expect = 7e-20 Identities = 321/487 (66%), Gaps = 10/487 (2%) Strand=Plus/Minus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||| || ||||||||| | || | |||||| |||| || |||||| | || Sbjct 163637 CAGGGGGGCAACAAGCGGCCAGGCTCCATTGTGGTCTACCTGGAGCCGTGGCACCCCGAT 163578 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || |||||||| | ||| || | |||||| | ||| || ||| ||||| || Sbjct 163577 GTCTTTGACTTCCTGGAGCTGAGGAAAAACACGGGCAAAGACGAGCTCAGAGCCCGGAGT 163518 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACG--GTGGCT 97053 ||||| || || ||| | || |||||||||||| |||| || | |||| ||| Sbjct 163517 TTGTTCCTGGCGCTGTGGATACCCGATTTGTTCATGCAGCGGGTGGAGGACGACTTGG-- 163460 Query 97054 ACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGA--TTGCTGGGGCGAAGA 97111 | |||| || | || || ||| | | || || ||| || |||| || || Sbjct 163459 AGTGGACGCTTTTCTGTCCGGACCAGGCCAAGGGCCTTCACGAGGTTTATGGG--GACGA 163402 Query 97112 GTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAGTCGATGC 97171 ||||| ||| ||| | ||||||| |||||| | | | | | || || Sbjct 163401 GTTTGTGGCTTTGTATGAGAGGTACGAGCGAGAGGGTCTGGGCCGGCGGAGTGTTTCGGC 163342 Query 97172 ACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCT 97231 || | || |||||| ||| || |||| || | ||||| || || ||||| || Sbjct 163341 GCGGAAGCTTTGGAAGTTCATTCTGGAGGCTGAGATTGAGACGGGCGTGCCCTACATCCT 163282 Query 97232 CTACAAGGATACCGTGAATCGCAACAGCAACCA-ACGCCACTTGGGCACCATCAAGGGCT 97290 ||||||||| | | || || || |||||||| | | |||||| || |||||||| Sbjct 163281 CTACAAGGACAGCTGCAACCGGAAGAGCAACCAGAAGAACCTTGGG-ACTATCAAGGGAA 163223 Query 97291 CCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTC 97350 |||||| || | || || || |||| || || || |||| |||||||| || Sbjct 163222 GCAATCTTTGTGCAGAGATAGTTGAGTTTACCAGCCCAGAGGAGATAGCAGTTTGTAATC 163163 Query 97351 TGGCATC 97357 |||| || Sbjct 163162 TGGCGTC 163156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058810943920