Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20displodere_20[genbank_20GCA_5F001642395.1_202016-05-11] 42 sequences; 3,066,400 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq4 170 4e-37 seq12 134 3e-26 seq2 134 3e-26 >seq4 Length=66353 Score = 170 bits (188), Expect = 4e-37 Identities = 402/595 (68%), Gaps = 13/595 (2%) Strand=Plus/Plus Query 268697 GATAGATTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCC 268756 ||||||||||| || |||||| | ||| | || || |||| ||||||||| | || Sbjct 58951 GATAGATTTGTCATCTTTCCAGTGCAGTACTACGACATCTGGAACATGTACAAAAACGCA 59010 Query 268757 GTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAAA 268816 || ||| ||| ||||| | ||||||||| || || ||| | || ||| | Sbjct 59011 GTGGCTAGTTTCTGGACCGCAGAAGAAGTCGACCTTGGAAGAGACATGGCTGACTGGGAG 59070 Query 268817 AAT-TTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAG 268875 || |||| ||| | |||||| || || || || | || || || ||||| | Sbjct 59071 AAGCTTAACGCCA-ACGAAAGACACTTCATTTCCTACGTCCTCGCCTTCTTTGCCGCCTC 59129 Query 268876 TGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAA-GAGGTACAGATTCCTG 268934 ||| || || ||||| ||||| || || || | ||| || | ||||| || || || Sbjct 59130 TGACGGAATTGTTAATGAAAACCTGGTTGAAAGGTT-TGCCTCTGAGGTGCAAATCAGTG 59188 Query 268935 AAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACA 268994 |||| |||| || ||||| |||||||| || || || || || | ||||||||| Sbjct 59189 AAGCTCGATGCTTCTACGGCTTCCAGATTATGATTGAGAACATCCACGCTGAGATGTACT 59248 Query 268995 GTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTCTTCTA 269054 ||| | || || || || || | | | |||||||| | ||| | | | Sbjct 59249 CCCTACTCATTGACACGTACATCAAGAGCCAGAGCGAAAAGACTTTCTTGTTTAATGCCA 59308 Query 269055 T-GAGAACTATGGACTGTGTGAGaaaaaaaT-CTGAATGGGCTCTGAAATGGATAAACGA 269112 | |||||| || | || | |||| || | || ||||| ||| |||||| || Sbjct 59309 TTGAGAAC-ATCC-CGGTCATAAAAAAGAAGGCAGACTGGGCGCTGCGGTGGATATCAGA 59366 Query 269113 T----AGCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCT 269168 | || | ||| | ||| || |||| || |||||| ||| ||||| || |||| Sbjct 59367 TGCTAAGGCCAGCTTT-GCAGAGCGGCTAGTGGCCTTTGCCTGTGTTGAAGGCATCTTCT 59425 Query 269169 TTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAA 269228 | || ||||| ||||| |||||||| ||| | |||||| |||| |||||||| || ||| Sbjct 59426 TCTCCGGGTCATTTGCAGCTATCTTCTGGCTCAAGAAACGAGGACTTATGCCTGGGCTAA 59485 Query 269229 CTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTG 269283 | ||||||||||| | || ||| | |||||||| | || |||||||| ||||| Sbjct 59486 CCTTCTCTAACGAGCTTATCAGCCGAGACGAAGGCCTTCATTGCGACTTTGCTTG 59540 >seq12 Length=514210 Score = 134 bits (148), Expect = 3e-26 Identities = 172/237 (73%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 104324 TTATTTATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTA 104383 || ||| ||| || | ||||| || || ||||| | || ||| |||||||| || Sbjct 293342 TTTTTTCCTCCTCCCCGGAGCCTGAGCACCAGATGAATCGTGCTTTCCTTCTGAATGTTG 293283 Query 104384 TAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGA 104443 ||||| || || || || || || || || || ||||| || || || || || || || Sbjct 293282 TAGTCTGAAAGTGTCCTTCCATCCTCAAGCTGCTTTCCGGCGAAGATAAGTCTTTGCTGG 293223 Query 104444 TCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTA 104503 |||| ||||||||| || || |||||||||||||| ||||| || |||| || || | Sbjct 293222 TCAGAAGGTATTCCCTCCTTGTCCTGAATCTTTGCCTTTACGTTCTCTATTGTGTCAGTG 293163 Query 104504 GGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || || | || || ||||| || ||||| || ||||| |||||||||||| Sbjct 293162 CTTTGGACGTCAATGGTGATCGTCTTGCCTGTAAGCGTCTTTACGAATATCTGCATT 293106 >seq2 Length=77616 Score = 134 bits (148), Expect = 3e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 ||||| || || ||||| | || ||| |||||||| || ||||| || || || || Sbjct 15625 AGCCTGAGCACCAGATGAATCGTGCTTTCCTTCTGAATGTTGTAGTCTGAAAGTGTCCTT 15566 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || || || || || ||||| || || || || || || || |||| ||||||||| || Sbjct 15565 CCATCCTCAAGCTGCTTTCCGGCGAAGATAAGTCTTTGCTGGTCAGAAGGTATTCCCTCC 15506 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 || |||||||||||||| ||||| || |||| || || | || || || | || Sbjct 15505 TTGTCCTGAATCTTTGCCTTTACGTTCTCTATTGTGTCAGTGCTTTGGACGTCAATGGTG 15446 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || ||||| || ||||| || ||||| |||||||||||| Sbjct 15445 ATTGTCTTGCCTGTAAGCGTCTTTACGAATATCTGCATT 15407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151397780403736