Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20displodere_20[genbank_20GCA_5F001642395.1_202016-05-11] 42 sequences; 3,066,400 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq34 168 2e-36 seq4 120 8e-22 >seq34 Length=240578 Score = 168 bits (186), Expect = 2e-36 Identities = 567/872 (65%), Gaps = 8/872 (1%) Strand=Plus/Minus Query 363443 TTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATG 363502 || |||| || |||||| | |||| ||||| || || | || || || |||| Sbjct 164011 TTATTGAGCGGCCGCAGTACATGTGGATGCGGGTGGCCGTGGGAATACACATGGAGGATA 163952 Query 363503 TTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTA-TTCACGCACGCCACG 363561 ||||||| |||||||| || ||| |||| | | | | | |||| || || ||| Sbjct 163951 TTGATGCAGCGATTGAGACGTATCAGCTCATGTCAAC-CAAGCACTTCATCCATGCTACG 163893 Query 363562 CCAACAATGTACAATGCTGGAACTCGTAA-TCCACAGATGTCTTCTTGCTTTCTTCTAAA 363620 ||||| | | || || || || ||| ||||||| | || || ||| | ||| Sbjct 163892 CCAACTCTTTTTAACGCCGGGACA-GTATCTCCACAGCTATCAAGCTGTTTTTTGCTATC 163834 Query 363621 AATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTC 363680 ||| | ||| || ||||| || |||| || |||||| | || || || || || Sbjct 163833 TATGCAAAGCGACTCAATCGATGGGATCTACTCAACGCTTAAGCAGTGCGCGCTAATCTC 163774 Query 363681 CAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAG-AACAGTTACA 363739 |||| | || || || ||||| || |||||||| | || || ||| ||| |||| Sbjct 163773 CAAGCACGCTGGGGGCATTGGCGTCAGCATCCACAACATCCGAGC-CAGCAACTCCTACA 163715 Query 363740 TTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATA 363799 | ||||| || ||||||| ||||| || || |||||||| || ||||| | Sbjct 163714 TCAAGGGCACCTTTGGGCACTCGAACGGGCTTGTGCCGATGCTTCGGGTCTTTGATGCGA 163655 Query 363800 CTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCG 363859 | | ||||| || |||||||| || ||||| ||| | ||| | || || | Sbjct 163654 CCTCAAGGTATGTGGACCAGGGGGGCAACAAGCGGCCAGGCTCCATTGTGGTCTACCTGG 163595 Query 363860 AGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGG 363919 |||| || ||||| | ||||| || || ||||| ||||||||||||| ||||| | Sbjct 163594 AGCCGTGGCACCCCGATGTCTTTGACTTCCTGGAGCTGAGGAAAAACACGGGCAAAGACG 163535 Query 363920 AATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCG 363979 | | | || || | ||||| || || ||| | | || || ||| |||| | Sbjct 163534 AGCTCAGAGCCCGGAGTTTGTTCCTGGCGCTGTGGATACCCGATTTGTTCATGCAGCGGG 163475 Query 363980 TGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTC-CGAT 364038 |||||| | | | ||| | || || || || || | | | ||| | ||| ||| Sbjct 163474 TGGAGGACGACTTGGAGTGGACGCTTTTCTGTCCGGAC-CAGGCCAAGGGCCTTCACGAG 163416 Query 364039 GTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGT 364098 || | || ||||| | ||| ||| | || || | ||| || ||||| || || Sbjct 163415 GTTTATGGGGACGAGTTTGTGGCTTTGTATGAGAGGTACGAGCGAGAGGGTCTGGGCCGG 163356 Query 364099 AAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGA 364158 || || | || | |||||| ||| ||| |||| | |||||||||| || Sbjct 163355 CGGAGTGTTTCGGCGCGGAAGCTTTGGAAGTTCATTCTGGAGGCTGAGATTGAGACGGGC 163296 Query 364159 ACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGT 364218 ||||| || | ||||| || |||||||| ||| ||||||| || ||||||| Sbjct 163295 GTGCCCTACATCCTCTACAAGGACAGCTGCAACCGGAAGAGCAACCAGAAGAACCTTGGG 163236 Query 364219 ACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACT 364278 || || || ||||| || ||| | ||||| |||| | ||| || || |||| Sbjct 163235 ACTATCAAGGGAAGCAATCTTTGTGCAGAGATAGTTGAGTTTACCAGCCCAGAGGAGATA 163176 Query 364279 GCCGTATGTAACCTTGCGTCGATCGCGCTTCC 364310 || || ||||| || ||||| || ||||| || Sbjct 163175 GCAGTTTGTAATCTGGCGTCCATGGCGCTACC 163144 Score = 131 bits (144), Expect = 4e-25 Identities = 272/398 (68%), Gaps = 18/398 (5%) Strand=Plus/Minus Query 364750 GCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCG 364809 |||| ||||| ||||| || || | ||||||||||| |||||||||||| ||| | Sbjct 162695 GCGCTGATGCCTACGGCCTCCACCTCCCAGATCCTCGGGTTCAACGAGTGCTTTGAAGGG 162636 Query 364810 TTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAG 364869 || || ||||| | || | || | |||||||| || || | ||| |||||| Sbjct 162635 TTCACGAGCAACATCTACACCCGAAGAACGCTTTCCGGGGAGTTCCAGGTTGTTAATCCA 162576 Query 364870 TACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGG---TGACAGCATGAAGAACTAT 364926 ||||| ||||| ||||| | ||||| ||||| ||| |||||||||| Sbjct 162575 TACCTTGTCAATGATCTGGCTTCTTTGGGGCTCTGGGGCCCTGA---GATGAAGAACTTG 162519 Query 364927 ATCATCG-CCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCC 364985 | || | || | || || ||||| || ||||| ||| | | || || | || || | Sbjct 162518 GTGATTGACCACGAA-GGATCTGTCCAAAACATCCCAAGCATACCCGACCACCTCAAACA 162460 Query 364986 TATTTACAAAACCGTATGGGAAATTTCCATGCGAA---CTCTCATTGATATGGCGGCCGA 365042 | |||||||| || ||||| || || || || | | ||||| ||| |||| Sbjct 162459 GCTCTACAAAACGGTCTGGGAGAT---CAAGCAAAAGGCCGTGATTGACCAGGCTGCCGC 162403 Query 365043 TCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCA--GCCAACC 365100 ||||| || ||| | |||||||||||| | ||| ||||| |||| ||||||| Sbjct 162402 ACGCGGAGCCTTTGTGGACCAGAGCCAGTCGATGAAC--ATTCACCTCTCAGCGCCAACC 162345 Query 365101 TCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAA 365138 | ||| ||||||| |||||| ||||| |||||||| Sbjct 162344 TTTGCCCAGCTTACCAGCATGCACTTCTATGGGTGGAA 162307 >seq4 Length=66353 Score = 120 bits (132), Expect = 8e-22 Identities = 346/518 (67%), Gaps = 22/518 (4%) Strand=Plus/Plus Query 22432 ATTAAGAATAAGGCAGATTGGGCGCTGAAATGGATGAACA-ATGA-ACGTTCA--TTCGC 22487 || || || |||||||| ||||||||| ||||| | || ||| | | || || || Sbjct 59326 ATAAAAAAGAAGGCAGACTGGGCGCTGCGGTGGAT-ATCAGATGCTAAGGCCAGCTTTGC 59384 Query 22488 GGAACGTCTTATTGCATTTGC-TGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTG 22546 || || || | || ||||| |||| |||||||||| ||||| || || ||||| | Sbjct 59385 AGAGCGGCTAGTGGCCTTTGCCTGTG-TTGAAGGCATCTTCTTCTCCGGGTCATTTGCAG 59443 Query 22547 CAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAA 22606 | ||||| ||||| || ||||| | | ||||||| || ||||| || || || ||| | | Sbjct 59444 CTATCTTCTGGCTCAAGAAACGAGGACTTATGCCTGGGCTAACCTTCTCTAACGAGCTTA 59503 Query 22607 TTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATA-TCGGAATCATATC 22665 | |||||||| || || |||||| ||| ||||| || | ||| | ||| | | | Sbjct 59504 TCAGCCGAGACGAAGGCCTTCATTGCGACTTTGCTTGCCTACTACACTCGCA--CCT--- 59558 Query 22666 ATTCATAAACTTCCATATGAAACTGTACTTGATATTATTACAAATGCAGTTGAACTT--G 22723 | || || | | ||| ||| | | || || | | || |||| | || | Sbjct 59559 AAACAACAAGTGCGATA--AAA---TCAAGAAAATCGTTGAAGAGGCCGTTGTAATTGAG 59613 Query 22724 AACGTCTATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAA 22783 || | | ||| |||||||| | || || ||||||||| ||||||| ||| | | Sbjct 59614 AAAGAGTTCTTA--TGCGAGGCTCTCCCCGTCTCTCTCATTGGCATCAATGTCGATACTA 59671 Query 22784 TGAGTACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGC 22843 || | || ||| | |||||||| || || || | | || || || | ||||| Sbjct 59672 TGTGCCAGTACATTGAGTTTGTTGCTGACCGGCTTCTTCTCTCGCTTGGCGAGCCAAAGA 59731 Query 22844 ATTATAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCA 22903 || |||| | || ||||| || | ||||| || || || ||||||| ||| Sbjct 59732 TATACAACGCCCAGAACCCATTCGACTTTATGGAGTACATCTCGCTGCGAGGAAAGTCCA 59791 Query 22904 ATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGCA 22941 | |||||||| || || || ||| ||||| |||||| Sbjct 59792 ACTTCTTCGAGAAGAGGGTCTCTGAGTACCAGAAAGCA 59829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303352898632844