Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20displodere_20[genbank_20GCA_5F001642395.1_202016-05-11] 42 sequences; 3,066,400 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq1 100 2e-16 seq11 93.3 3e-14 >seq1 Length=651558 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 38121 GTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCG 38180 ||||| ||||| ||||| |||||||| | | | | | |||| || | || || ||| Sbjct 630389 GTGCTTTCCTTCTGAATGTTGTAATCTGCAAGAGTTCTTCCGTCCTCAAGCTGCTTCCCG 630448 Query 38181 GCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTC 38240 ||||| || || | || || |||| |||| ||||||||||||| ||||| |||| Sbjct 630449 GCAAAAATAAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTGTCCTGGATTTTGGTCTTC 630508 Query 38241 ACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTT 38300 ||| | | || || ||| | | || || ||||| ||||| || || || || | || Sbjct 630509 ACAGTGTCAACCGTGTCTGAATTCTCCACGTCTAAGGTAATGGTCTTGCCTGTGAGTGTC 630568 Query 38301 TTCACGAATATCTGCATG 38318 || ||||| ||||||||| Sbjct 630569 TTTACGAAGATCTGCATG 630586 >seq11 Length=12635 Score = 93.3 bits (102), Expect = 3e-14 Identities = 78/93 (84%), Gaps = 6/93 (6%) Strand=Plus/Minus Query 25904 GCCCGTTCCCTTGGCTGTGGTTTCGCTAGATA---GTAG--ATAGGGGGTAATCTCGTTA 25958 |||||||||| |||||||||||||||| || |||| | || ||| ||||||||| Sbjct 761 GCCCGTTCCCCTGGCTGTGGTTTCGCTGGAGGCGGGTAGGGACAGCGGG-AATCTCGTTG 703 Query 25959 ATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||| |||||||||||||||||||||||||||| Sbjct 702 GTCCATTCATGCGCGTCACTAATTAGATGACGA 670 Score = 93.3 bits (102), Expect = 3e-14 Identities = 78/93 (84%), Gaps = 6/93 (6%) Strand=Plus/Minus Query 25904 GCCCGTTCCCTTGGCTGTGGTTTCGCTAGATA---GTAG--ATAGGGGGTAATCTCGTTA 25958 |||||||||| |||||||||||||||| || |||| | || ||| ||||||||| Sbjct 12469 GCCCGTTCCCCTGGCTGTGGTTTCGCTGGAGGCGGGTAGGGACAGCGGG-AATCTCGTTG 12411 Query 25959 ATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||| |||||||||||||||||||||||||||| Sbjct 12410 GTCCATTCATGCGCGTCACTAATTAGATGACGA 12378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334947028548902