Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20displodere_20[genbank_20GCA_5F001642395.1_202016-05-11] 42 sequences; 3,066,400 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq4 228 9e-55 >seq4 Length=66353 Score = 228 bits (252), Expect = 9e-55 Identities = 534/788 (68%), Gaps = 22/788 (3%) Strand=Plus/Minus Query 92927 TCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTACA 92986 ||||| ||||| || |||||||| |||| ||| ||| || || | ||| || Sbjct 59699 TCAGCAACAAACTCAATGTACTGGCACATAGTATCGACATTGATGCCAATGAGAGAGACG 59640 Query 92987 GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTATT 93046 || ||||| ||| ||||| |||||||| ||||||||||| |||| | ||||| | Sbjct 59639 GGGAGAGCCTCGCATAAGAACTCTTTCTCAATTACAACGGCCTCTTCAACGATTTTCTTG 59580 Query 93047 ACTCTA-CTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCGGT 93105 | | || | | || |||| || ||| |||| || ||| ||||||||| Sbjct 59579 ATTTTATCGCACTTGTTGTTTAGGTGCGAG-----TGTAG--TAGGCAAGCAAAGTCGCA 59527 Query 93106 ATGTAAACCTTCGTCTCG--TGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGT 93163 ||| | ||||||||||| ||||| | ||| || ||| |||| || || | ||| Sbjct 59526 ATGAAGGCCTTCGTCTCGGCTGATA--AGCTCGTTAGAGAAGGTTAGCCCAGGCATAAGT 59469 Query 93164 CCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACG 93223 ||||||||||||||||| || || | ||||| || || || || || ||||| || Sbjct 59468 CCTCGTTTCTTGAGCCAGAAGATAGCTGCAAATGACCCGGAGAAGAAGATGCCTTCAACA 59409 Query 93224 GCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTA-CTGCTGATCCATTTTAA 93282 ||||| ||||| | || || ||||| | || | | ||| | ||||| | Sbjct 59408 CAGGCAAAGGCCACTAGCCGCTCTGCAAAGCTGGCCTTAGCATCTGAT-ATCCACCGCAG 59350 Query 93283 AGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTT-TCGATAGCGTTAAATAGGTAA- 93340 ||||| || || || || || || || | |||| || || || ||||| | | || Sbjct 59349 CGCCCAGTCTGCCTTCTTTTTTATGACCGGGA-TGTTCTCAATGGCATTAAACAAGAAAG 59291 Query 93341 TCTCGCTCG-TCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATG 93399 ||| ||| || | ||| | ||||| || || || | || || ||||| |||| || Sbjct 59290 TCTTT-TCGCTCTGGCTCTTG-ATGTACGTGTCAATGAGTAGGGAGTACATCTCAGCGTG 59233 Query 93400 GACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTC 93459 || ||||| || ||| ||||| |||||||| |||| |||||| |||| ||||| || Sbjct 59232 GATGTTCTCAATCATAATCTGGAAGCCGTAGAAGCATCGAGCTTCACTGATTTGCACCTC 59173 Query 93460 TTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGC 93519 | ||| || || || || |||||||| || || || || || || ||||| || || Sbjct 59172 AGAGGCAAACCTTTCAACCAGGTTTTCATTAACAATTCCGTCAGAGGCGGCAAAGAAGGC 59113 Query 93520 CAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATC 93579 | | | || || ||| | || | | |||||||| ||||| || | | || Sbjct 59112 GAGGACGTAGGAAATGAAGTGTCTTTCGTTGGCGTTAAGCTTCTCCCAGTCAGCCATGTC 59053 Query 93580 TTTTGAAAGATCGACTTCTTCGACAGTCCA-AAACGATGCTTCTGCTTTTTTGTACATAT 93638 | || ||| ||||||||||| | ||||| |||| | || |||| ||||||||||| | Sbjct 59052 TCTTCCAAGGTCGACTTCTTCTGCGGTCCAGAAACTA-GCCACTGCGTTTTTGTACATGT 58994 Query 93639 CCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTA 93698 ||| ||||| | || || | |||||| |||||||| | || | | | |||| ||| | Sbjct 58993 TCCAGATGTCGTAGTACTGCACTGGAAAGATGACAAATCTATCCGTGCTCTCTTCTAGAA 58934 Query 93699 ACGGCTCT 93706 |||||| Sbjct 58933 TAGGCTCT 58926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556860507648080