Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20displodere_20[genbank_20GCA_5F001642395.1_202016-05-11] 42 sequences; 3,066,400 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq12 154 3e-32 seq2 154 3e-32 seq4 129 1e-24 seq1 122 2e-22 >seq12 Length=514210 Score = 154 bits (170), Expect = 3e-32 Identities = 174/231 (75%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 |||||| || || | | |||| || | |||| || || || ||||| || || || Sbjct 293334 TCCTCCCCGGAGCCTGAGCACCAGATGAATCGTGCTTTCCTTCTGAATGTTGTAGTCTGA 293275 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 |||||||| ||||| || | |||||| |||||||| || |||||||| ||||| | || Sbjct 293274 AAGTGTCCTTCCATCCTCAAGCTGCTTTCCGGCGAAGATAAGTCTTTGCTGGTCAGAAGG 293215 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTC--TGCTGATTCT 68411 || || |||||||| |||||||||||||| ||| ||| || ||||| |||| || Sbjct 293214 TATTCCCTCCTTGTCCTGAATCTTTGCCTTTACGTTCTCTATTGTGTCAGTGCT--TTGG 293157 Query 68412 ACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || || | |||||| || || || || || ||||| ||||||||||||||| Sbjct 293156 ACGTCAATGGTGATCGTCTTGCCTGTAAGCGTCTTTACGAATATCTGCATT 293106 >seq2 Length=77616 Score = 154 bits (170), Expect = 3e-32 Identities = 174/231 (75%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 |||||| || || | | |||| || | |||| || || || ||||| || || || Sbjct 15635 TCCTCCCCGGAGCCTGAGCACCAGATGAATCGTGCTTTCCTTCTGAATGTTGTAGTCTGA 15576 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 |||||||| ||||| || | |||||| |||||||| || |||||||| ||||| | || Sbjct 15575 AAGTGTCCTTCCATCCTCAAGCTGCTTTCCGGCGAAGATAAGTCTTTGCTGGTCAGAAGG 15516 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTC--TGCTGATTCT 68411 || || |||||||| |||||||||||||| ||| ||| || ||||| |||| || Sbjct 15515 TATTCCCTCCTTGTCCTGAATCTTTGCCTTTACGTTCTCTATTGTGTCAGTGCT--TTGG 15458 Query 68412 ACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || || | |||||| || || || || || ||||| ||||||||||||||| Sbjct 15457 ACGTCAATGGTGATTGTCTTGCCTGTAAGCGTCTTTACGAATATCTGCATT 15407 >seq4 Length=66353 Score = 129 bits (142), Expect = 1e-24 Identities = 314/462 (68%), Gaps = 18/462 (4%) Strand=Plus/Minus Query 9945 GCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTCG-AGGGAAAT 10003 || ||||||||||| || |||| |||||||||||||||||| ||||| || || || Sbjct 59828 GCTTTCTGGTACTCAGAGACCCTCTTCTCGAAGAAGTTGGACTT-TCCTCGCAGCGAGAT 59770 Query 10004 GAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACCGAGTGCTGT 10063 | |||||| ||||| || ||||||| |||| | ||| || | || || | | Sbjct 59769 GTACTCCATAAAGTCGAATGGGTTCTGGGCGTTGTATATCTTTGGCTCGCCAAGCG-AGA 59711 Query 10064 GAA-AATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGA-GTTCATGCCA 10121 ||| || |||||||| || ||||| |||||||||| ||| || ||| || |||||| Sbjct 59710 GAAGAAGCCGGTCAGCAACAAACTCAATGTACTGGCACAT-AGTATCGACATTGATGCCA 59652 Query 10122 ATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGCTTCCTCG 10181 || | | ||||| || ||||| | ||| || || || | | || || || || Sbjct 59651 ATGAGAGAGACGGGGAGAGCCTCGCATAAGAACTCTTTCTCAATTACAACGGCCTCTTCA 59592 Query 10182 ACGATGCTCTTTACCACGTCAAGGGACAGCTTGTTCTCGAGCTTCGAATACAGGAGCTCT 10241 ||||| |||| | | | | | |||||| | || | ||| | || || Sbjct 59591 ACGATTTTCTT---GATTTTATCGCA---CTTGTTGTTTAGGTGCGAGTGTAGTAGGCAA 59538 Query 10242 CCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAACCCAGACCG 10301 |||| | || ||||| ||||| |||||||| | |||||| || || || || Sbjct 59537 GCAAAGTCGCAATGAAGGCCTTCGTCTCGGCTGATAAGCTCGTTAGAGAAGGTTAGCCCA 59478 Query 10302 GGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGC-GCAGAACGACCCGGAGAACAGAAG 10360 ||||| || || || || |||||||| || || ||| || |||||||||| ||||| Sbjct 59477 GGCATAAGTCCTCGTTTCTTGAGCCAGAAGATAGCTGCA-AATGACCCGGAGA--AGAAG 59421 Query 10361 A--CCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAG 10400 | || || || || | |||| || || |||||||| ||| Sbjct 59420 ATGCCTTCAACACAGGCAAAGGCCACTAGCCGCTCTGCAAAG 59379 >seq1 Length=651558 Score = 122 bits (134), Expect = 2e-22 Identities = 144/193 (75%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 68271 TCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAAT 68330 || || || ||||| ||||| | || || || || || || | |||||||||||| || Sbjct 630395 TCCTTCTGAATGTTGTAATCTGCAAGAGTTCTTCCGTCCTCAAGCTGCTTCCCGGCAAAA 630454 Query 68331 ATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCC 68390 || || || || |||||||| || |||||||| ||||| || || || | ||| || | Sbjct 630455 ATAAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTGTCCTGGATTTTGGTCTTCACAGTG 630514 Query 68391 TCGATGGTGTCTGCTGATTCT--ACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGA 68448 || | ||||||| ||||| || || ||||| ||||| || || ||||| ||||| | Sbjct 630515 TCAACCGTGTCTG--AATTCTCCACGTCTAAGGTAATGGTCTTGCCTGTGAGTGTCTTTA 630572 Query 68449 CGAATATCTGCAT 68461 |||| |||||||| Sbjct 630573 CGAAGATCTGCAT 630585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921621916148240