Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20displodere_20[genbank_20GCA_5F001642395.1_202016-05-11] 42 sequences; 3,066,400 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq34 259 9e-64 seq4 250 5e-61 >seq34 Length=240578 Score = 259 bits (286), Expect = 9e-64 Identities = 438/631 (69%), Gaps = 4/631 (1%) Strand=Plus/Plus Query 244688 GCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGG 244747 ||||| || || || || | |||||| | | |||| ||| || ||||| | || || Sbjct 163159 GCCAGATTACAAACTGCTATCTCCTCTGGGCTGGTAAACTCAACTATCTCTGCACAAAGA 163218 Query 244748 TTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTG 244807 || || | |||||| || || |||| || || ||| ||| ||||||| ||||||| Sbjct 163219 TTGCTTCCCTTGATAGTCCCAAGGTTCTTCTGGTTGCTCTTCCGGTTGCAGCTGTCCTTG 163278 Query 244808 TAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCC 244867 ||||| ||| ||||| | || ||||| | || || | || | | ||||| || | | Sbjct 163279 TAGAGGATGTAGGGCACGCCCGTCTCAATCTCAGCCTCCAGAATGAACTTCCAAAGCTTC 163338 Query 244868 CTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCG 244927 | ||| || ||| || || |||||| |||||| | |||| ||| | Sbjct 163339 CGCGCCGAAACACTCCGCCGGCCCAGACCCTCTCGCTCGTACCTCTCATACAAAGCCACA 163398 Query 244928 AACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCAC 244987 |||||| || | ||||||| ||||| | | |||| || | || ||||| Sbjct 163399 AACTCGTCCCCATAAACCTCGTGAAGGCCCTTGGCCTGGTCCGGACAGAAAAGCGTCCAC 163458 Query 244988 TCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGG 245047 || | |||||| |||| ||||||||| | ||||| ||||| || ||| |||| | Sbjct 163459 TCCAAGTCGTCCTCCACCCGCTGCATGAACAAATCGGGTATCCACAGCGCCAGGAACAAA 163518 Query 245048 TCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACG 245107 || || || ||||||| ||| ||||| ||||||||||||| ||||||||||| Sbjct 163519 CTCCGGGCTCTGAGCTCGTCTTTGCCCGTGTTTTTCCTCAGCTCCAGGAAGTCAAAGACA 163578 Query 245108 TCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGG 245167 ||| |||||| ||||||| |||||| | | || ||| |||||||||||||| |||||| Sbjct 163579 TCGGGGTGCCACGGCTCCAGGTAGACCACAATGGAGCCTGGCCGCTTGTTGCCCCCCTGG 163638 Query 245168 TCCACCATCCTCTCGAG--CGCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGT 245225 |||| ||| | || ||| ||| | |||| || || | ||||| | ||||| |||| Sbjct 163639 TCCA-CATAC-CTTGAGGTCGCATCAAAGACCCGAAGCATCGGCACAAGCCCGTTCGAGT 163696 Query 245226 GGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTA 245285 | || ||||||||||||||||| | || | | || |||| |||| | ||| | Sbjct 163697 GCCCAAAGGTGCCCTTGATGTAGGAGTTGCTGGCTCGGATGTTGTGGATGCTGACGCCAA 163756 Query 245286 GTCCGCCGGCGTGCTTGGAGATGAGGGCGCA 245316 || || |||||||||||||| || ||||| Sbjct 163757 TGCCCCCAGCGTGCTTGGAGATTAGCGCGCA 163787 >seq4 Length=66353 Score = 250 bits (276), Expect = 5e-61 Identities = 590/873 (68%), Gaps = 41/873 (5%) Strand=Plus/Plus Query 42289 AGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTT-CTCCAA-CTGGACCGCCGA 42346 || || | ||||||||| ||||||||| || |||||| || ||||||||| || Sbjct 58976 AGTACTACGACATCTGGAACATGTACAAAAA--CGCAGTGGCTAGTTTCTGGACCGCAGA 59033 Query 42347 GGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAA---A 42403 || | ||||| | | |||| ||| | ||||||| || | ||||||| | Sbjct 59034 AGAAGTCGACCTTGGAAGAGACATGGCTGACTGGGAGAAGCTTAACGCCAACGAAAGACA 59093 Query 42404 GTT--TTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAG 42461 || |||||| || | || |||||||| |||||||||||||| || || ||||| Sbjct 59094 CTTCATTTCCT-----ACGTCCTCGCCTTCTTTGCCGCCTCTGACGGAATTGTTAATGAA 59148 Query 42462 AACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGC 42521 ||||||| ||||| |||||||| | ||| || || |||||||||||| Sbjct 59149 AACCTGGTTGAAAGGTTTGCCTCTGAGGTGCAAATCAGTGAAGCTCGATGCTTCTACGGC 59208 Query 42522 TTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTAC 42581 |||||||| || |||||| | ||| ||||| ||||| || ||| | |||||||| Sbjct 59209 TTCCAGATTATGATTGAGAACATCCACGCTGAGATGTACTCCCTACTCATTGACACGTAC 59268 Query 42582 ATCCTGGATCCCGTCGAGCGTAACG----GGCTGTTCAAGGCCATGGAGACGATGCCCTG 42637 || | || || ||||| || | |||| || ||||| |||| || || Sbjct 59269 AT-CAAGAGCC---AGAGCGAAAAGACTTTCTTGTTTAATGCCATTGAGAACATCCCGGT 59324 Query 42638 CATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGAT-CGAGAGTCCCGACGCAACGTTCG 42696 ||| || |||||||| ||||||||||| ||||| ||| | | | || | || | Sbjct 59325 CATAAAAAAGAAGGCAGACTGGGCGCTGCGGTGGATATCAGA-TGCTAAGGCCAGCTTTG 59383 Query 42697 GCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCT 42756 ||| |||| || |||||| || || || |||||||||||||| || | || || Sbjct 59384 CAGAGCGGCTAGTGGCCTTTGCCTGTGTTGAAGGCATCTTCTTCTCCGGGTCATTTGCAG 59443 Query 42757 CCATCTTCTGGCTCAAG-CAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTC 42815 | ||||||||||||||| | ||| | ||||| || || |||||||| ||||| || Sbjct 59444 CTATCTTCTGGCTCAAGAAACGAGGACT-TATGCCTGGGCTAACCTTCTCTAACGAGCTT 59502 Query 42816 ATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTC 42875 |||||| | ||||| || || ||| | |||||||| ||||| || |||| ||||| Sbjct 59503 ATCAGCCGAGACGAAGGCCTTCATTGCGACTTTGCTTGCCTACTACACTCG---CACCTA 59559 Query 42876 AGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAG 42935 | ||||| | || || | ||| | |||||||| | || ||| Sbjct 59560 AACAACAAGTGC------GATAAAATCAAGAAAATCGTTGAAGAGGCCGTTGTAATTGAG 59613 Query 42936 AAGGAGTTCCTCACGC-AGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCAT 42994 || ||||| || | || || | || ||||| || || | ||||| || ||| || Sbjct 59614 AAAGAGTT-CTTATGCGAGGCTCTCCCCGTCTCTCTCATTGGCATCAATGTCGATACTAT 59672 Query 42995 GTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCC--GC 43052 |||| ||||||| ||| || || |||| || || | | | || |||| Sbjct 59673 GTGCCAGTACATTGAGTTTGTTGCTGACCGGCTTCTTCTCTCGCTTGG--CGAGCCAAAG 59730 Query 43053 CTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACC 43112 | |||||| | | | ||| ||||||||||||||| |||||||| || || ||| || Sbjct 59731 ATATACAACGCCCAGAACCCATTCGACTTTATGGAGTACATCTCGCTGCGAGGAAAGTCC 59790 Query 43113 AACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 ||||| ||||||||| | ||| | || |||||| Sbjct 59791 AACTTCTTCGAGAAGAGGGTCTCTGAGTACCAG 59823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338704221920