Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20displodere_20[genbank_20GCA_5F001642395.1_202016-05-11] 42 sequences; 3,066,400 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq4 127 5e-24 >seq4 Length=66353 Score = 127 bits (140), Expect = 5e-24 Identities = 365/553 (66%), Gaps = 19/553 (3%) Strand=Plus/Plus Query 243195 AGAGCGAAACGAGCTTTTCG----ACGCCATCGAAAACATTCCGGCGGTTCATAACAAGG 243250 ||||||||| || || | | | ||||| || ||||| |||| | | || |||| Sbjct 59279 AGAGCGAAAAGACTTTCTTGTTTAATGCCATTGAGAACATCCCGGTCATAAAAAAGAAGG 59338 Query 243251 CAAAATGGGCTCAGAAGTGGCTAGAACCCGGTAAATCA---TTTGCTGAGCGTCTCGTCG 243307 || | ||||| | | |||| || | | ||| | ||||| ||||| || || | Sbjct 59339 CAGACTGGGCGCTGCGGTGGATATCAGATGCTAAGGCCAGCTTTGCAGAGCGGCTAGTGG 59398 Query 243308 CCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGC-GCCATCTTTTGGCTG 243366 ||| | || |||||||| || | || |||||| || ||| || ||||| ||||| Sbjct 59399 CCTTTGCCTGTGTTGAAGGCATCTTCTTCTCCGGGTCATT-TGCAGCTATCTTCTGGCTC 59457 Query 243367 CGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAG 243426 ||| ||| | |||||||| || | ||||||||| | ||||| || ||||| Sbjct 59458 AAGAAACGAGGACTTATGCCTGGGCTAACCTTCTCTAACGAGCTTATCAGCCGAGACGAA 59517 Query 243427 GGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCTCCAGAACAAGCTACCATTC 243486 |||||||| | || | | || | | || | || | |||||| | | Sbjct 59518 GGCCTTCATTGCGACTTTGCTTGCCTACTACACTCGCACCTAAACAACAAG------TGC 59571 Query 243487 GAAACGGTCAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGAC 243546 || | |||| ||||| | ||| || |||| || || || || ||| | ||||| Sbjct 59572 GATAAAATCAAGAAAATCGTTGAAGAGGCCGTTGTAATTGAGAAAGAGTTCTTATGCGAG 59631 Query 243547 GCTATTCCATGCCGGCTTATTGGCATGAACTCTGA-ACTCATGGGACAGTACATCGAATT 243605 ||| | || | || |||||||| || || ||| ||| | |||||||| || || Sbjct 59632 GCTCTCCCCGTCTCTCTCATTGGCATCAATGTCGATACT-ATGTGCCAGTACATTGAGTT 59690 Query 243606 CGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAG-TGTACAACTCCAAGAACC 243664 || || ||||| || | || ||||||| | | |||| | |||||| || |||||| Sbjct 59691 TGTTGCTGACCGGCTTCTTCTCTCGCTTGGCGA-GCCAAAGATATACAACGCCCAGAACC 59749 Query 243665 CCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTG 243724 | || | |||||||||| ||| ||||| | ||| || | ||||||||||| ||| | | Sbjct 59750 CATTCGACTTTATGGAGTACATCTCGCTGCGAGGAAAGTCCAACTTCTTCGAGAAGAGGG 59809 Query 243725 TCAGTGATTATCA 243737 || ||| || || Sbjct 59810 TCTCTGAGTACCA 59822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102879406512700