Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20displodere_20[genbank_20GCA_5F001642395.1_202016-05-11] 42 sequences; 3,066,400 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq4 134 2e-26 seq34 125 9e-24 >seq4 Length=66353 Score = 134 bits (148), Expect = 2e-26 Identities = 524/804 (65%), Gaps = 26/804 (3%) Strand=Plus/Minus Query 125768 ACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCT-GATATTCTCCATAAAATCAAA 125826 |||| ||||||||||||||| | ||| || || ||| ||| | ||||||||| || || Sbjct 59810 ACCCTCTTCTCGAAGAAGTTGGACTTTCC-TCGCAGCGAGATGTACTCCATAAAGTCGAA 59752 Query 125827 TGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGGAGACGATCCGAGAC 125886 |||||||| | ||| | || ||||| | |||| | || || || || | || Sbjct 59751 TGGGTTCTGGGCGTTGTATATCTTTGGCTCGCCAAGCGAGAGAAGAAGCCGGTCAGCAAC 59692 Query 125887 GTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG-GTTACATGGGAGCG 125945 |||||||||||| |||| | || || || || ||||| | || ||||| | Sbjct 59691 AAACTCAATGTACTGGCACATAGTATCGACATTGATGCCAATGAGAGAGACG-GGGAGAG 59633 Query 125946 CGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCGTGAATGGTGT 126005 | || | | |||| | ||||||||| | ||||| || ||||| | || | | Sbjct 59632 CCTCGCATAAGAACTCTTTCTCAATTACAACGGCCTCTTCAACGATTTTCTTGATTTTAT 59573 Query 126006 C-CACCCCAGGTCTAT-TGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTCTTGGTGGAG 126063 | ||| || || |||| ||| | | || || | |||| || || || Sbjct 59572 CGCACTTGTTGTTTAGGTGCG---AGTGTAGTAGG----CAAG-CAAAGTCGCAATGAAG 59521 Query 126064 ACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTT 126123 || ||||| ||| ||| || || || |||||| || || ||||| || || || || Sbjct 59520 GCCTTCGTCTCGGCTGATAAGCTCGTTAGAGAAGGTTAGCCCAGGCATAAGTCCTCGTTT 59461 Query 126124 CTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAA 126183 ||| | |||||| || || |||||| || ||||||||||| || || ||||| || || Sbjct 59460 CTTGAGCCAGAAGATAGCTGCAAATGACCCGGAGAAGAAGATGCCTTCAACACAGGCAAA 59401 Query 126184 CGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTC---AAACCACTTCATCGCCCA 126240 || | || ||||| |||| ||| | ||| | || | |||| || |||||| Sbjct 59400 GGCCACTAGCCGCTCTGCAA---AGCTGGCCTTAGCATCTGATATCCACCGCAGCGCCCA 59344 Query 126241 CTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTTTC 126300 | ||||| || | || ||||| | ||| || || | ||| | ||||||| Sbjct 59343 GTCTGCCTTCTTTTTTATGACCGGGATGTTCTCAATGGCATTAAACAAGAAAGTCTTTTC 59284 Query 126301 -TGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTGGACCATTT 126359 ||| || ||||||||| | || |||||| || || | || |||||| | | Sbjct 59283 GCTCTGGCTC-TTGATGTACGTGTCAATGAGTAGGGAGTACATCTCAGCGTGGATGTTCT 59225 Query 126360 CATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATCGGCAA 126419 || | ||| | ||||||| | || ||||| || || || |||||| ||||| Sbjct 59224 CAATCATAATCTGGAAGCCGTAGAAGCATCGAGCTTCACTGATTTGCACCTCAGAGGCAA 59165 Query 126420 AATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCCAGGATAT 126479 | | | | | || ||| ||||||||| || || | ||||| || || |||| | Sbjct 59164 ACCTTTCAACCAGGTTTTCATTAACAATTCCGTCAGAGGCGGCAAAGAAGGCGAGGACGT 59105 Query 126480 ACTTTATGAA-TTTCTGTTCATTCTCGTTCAGGGTCTTCCAGTC-GTCAAGATCCTTCGA 126537 | ||||| | ||| ||| || |||| || ||| |||||| | || | |||| | Sbjct 59104 AGGAAATGAAGTGTCT-TTCGTTGGCGTTAAGCTTCTCCCAGTCAGCCATGTCTCTTCCA 59046 Query 126538 GAGATCTACCTCCTCCGCAGTCCA 126561 || || || || || || ||||| Sbjct 59045 -AGGTCGACTTCTTCTGCGGTCCA 59023 >seq34 Length=240578 Score = 125 bits (138), Expect = 9e-24 Identities = 620/964 (64%), Gaps = 40/964 (4%) Strand=Plus/Plus Query 114284 ACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGA 114343 |||||||| || || || || || ||||| || || || || || | |||||| | || Sbjct 162961 ACATCCGCCAGGCCCTGAACTCCAAGGCCGATCGGCCGGTGCCTTAGATTAGAGTGCCGC 163020 Query 114344 GCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACC 114403 | ||| | ||| || || ||| || | | || || ||||| |||||| Sbjct 163021 GACTCCTCAAGGGGGTACTTGTTAACATCAATGATTTTGTTCAGGTTTTTAACAACAACC 163080 Query 114404 TTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTC-TCTTCATTG-ACAT--A 114459 || | |||| | | ||||| | | ||||| |||| | | || | | | | || | Sbjct 163081 TTAACGGTTTCTTTCAACTTTTGGAAGTCAAA-CTGCAAAGCGTCCCCCTCGGAAATGAA 163139 Query 114460 CTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTC 114519 | || || || || |||||||||||||| || | |||| || || |||| Sbjct 163140 GGTTGGTAGCGCCATGGACGCCAGATTACAAACTGCTATCTCCTCTGGGCTGGTAAACTC 163199 Query 114520 TATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTT 114579 | || || | ||| | ||| | ||| || || || | |||||| || || ||| Sbjct 163200 AACTATCTCTGCACAAAGATTGCTTCCCTTGATAGTCCCAAGGTTCTTCTGGTTGCTCTT 163259 Query 114580 TGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAG 114639 ||| || |||||||| || ||||| ||| |||||||| | | | || || Sbjct 163260 CCGGTTGCAGCTGTCCTTGTAGAGGATGTAGGGCACGCCCGTCTCAATCTCAGCCTCCAG 163319 Query 114640 AATAGCCTTCCAGA-CATCGGCGGCTGGCACAGTGGCGTTGGCTC-GCCCCTCCTCCTCG 114697 ||| |||||| | | || || || | ||| | || ||| | | ||||| |||| Sbjct 163320 AATGAACTTCCAAAGCTTCCGC-GCCGAAACACT-CCGCCGGCCCAGACCCTCTCGCTCG 163377 Query 114698 TACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTC-TGAGAGCCCTGGTGCCTT 114756 ||| | || | || ||||||| || || |||| ||| ||||| | |||| Sbjct 163378 TACCTCTCATACAAAGCCACAAACTCGTCCCCATAAACCTCGTGAAGGCCCTTG-GCCTG 163436 Query 114757 ATCTGGGCAGAAGAGAGACCATTGACCA--CCCTCCTCAACACGCTTCATGAAGAGGTCT 114814 || || ||||| || | ||| | ||| | ||||| || |||| |||||| | || Sbjct 163437 GTCCGGACAGAAAAGCGTCCACT--CCAAGTCGTCCTCCACCCGCTGCATGAACAAATCG 163494 Query 114815 GGGATCCAGAGAGCTGAGAAGAGA-TCCCGACAGCGAGCT--TCTTCATCCCCCTGATTG 114871 || ||||| || || ||| | | ||| | | ||||| |||| | ||| || || Sbjct 163495 GGTATCCACAGCGCCAGGAACAAACTCCGGGCTCTGAGCTCGTCTT--TGCCCGTG-TTT 163551 Query 114872 AGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGAT- 114930 | || ||||| ||||| | || ||| | ||||||||| |||||||| ||| | || Sbjct 163552 TTCCTCAGCTCCAGGAAGTCAAAGACATCGGGGTGCCACGGCTCCAGGTAGACCACAATG 163611 Query 114931 -----TGACCCCTTACGACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACG 114985 || || ||| | | || |||||| |||||||| | || |||| ||| || Sbjct 163612 GAGCCTGGCCGCTT--GTTG-CCCCCCTGGTCCACATACCTTGAGGTCGCATCAAAGACC 163668 Query 114986 CGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTG 115045 |||||||| || | | || | || || ||| || ||| || || || || Sbjct 163669 CGAAGCATCGGCACAAGCCCGTTCGAGTGCCCAAAGGTGCCCTTGATGTAGGAGTTGCTG 163728 Query 115046 GCTCTGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCAC 115105 |||| || | |||||| | ||||| ||||| || ||| |||||| |||||||| Sbjct 163729 GCTCGGATGTTGTGGATGCTGACGCCAATGCCCCCAGCGTGCTTGGAGATTAGCGCGCAC 163788 Query 115106 TCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGC---GATA--AGGA 115160 | | | || | ||||||||| ||||| ||||| | ||||| |||| | | Sbjct 163789 TGCTTAAGCGTTGAGTAGATCCCATCGATTGAGTCGC-----TTTGCATAGATAGCAAAA 163843 Query 115161 AGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGA 115220 | ||||| || | ||||| | ||| || ||||| || || ||||| || || |||| Sbjct 163844 AACAGCTTGATAGCTGTGGAGATACTGTCCCGGCGTTAAAAAGAGTTGGCGTAGCATGGA 163903 Query 115221 TGAA 115224 |||| Sbjct 163904 TGAA 163907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597353286389360