Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20displodere_20[genbank_20GCA_5F001642395.1_202016-05-11] 42 sequences; 3,066,400 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1 136 4e-27 seq12 102 8e-17 seq2 102 8e-17 >seq1 Length=651558 Score = 136 bits (150), Expect = 4e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 64229 CTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCG 64288 || ||||| || || || || ||| || ||||||||||||||||| | || | || Sbjct 630371 CTGAGCACAAGGTGGATGGTGCTTTCCTTCTGAATGTTGTAATCTGCAAGAGTTCTTCCG 630430 Query 64289 TCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTT 64348 || ||||||||||| |||||| |||| |||| ||||||||||||||| || |||||||| Sbjct 630431 TCCTCAAGCTGCTTCCCGGCAAAAATAAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTG 630490 Query 64349 TCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACG 64408 || || ||||| ||| ||| || || || || ||||| |||| || | | Sbjct 630491 TCCTGGATTTTGGTCTTCACAGTGTCAACCGTGTCTGAATTCTCCACGTCTAAGGTAATG 630550 Query 64409 GTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||| || | || |||||||| || ||||| Sbjct 630551 GTCTTGCCTGTGAGTGTCTTTACGAAGATCTGCAT 630585 >seq12 Length=514210 Score = 102 bits (112), Expect = 8e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 64229 CTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCG 64288 || ||||| ||||||||||| ||| || ||||||||||| |||| | || | | Sbjct 293321 CTGAGCACCAGATGAATCGTGCTTTCCTTCTGAATGTTGTAGTCTGAAAGTGTCCTTCCA 293262 Query 64289 TCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTT 64348 || ||||||||||| ||||| | || || | |||||||| | ||| ||||| || || Sbjct 293261 TCCTCAAGCTGCTTTCCGGCGAAGATAAGTCTTTGCTGGTCAGAAGGTATTCCCTCCTTG 293202 Query 64349 TCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACG 64408 || || || ||| |||||| ||| | ||| ||| | | || || | || | Sbjct 293201 TCCTGAATCTTTGCCTTTACGTTCTCTATTGTGTCAGTGCTTTGGACGTCAATGGTGATC 293142 Query 64409 GTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 |||||||| || | || |||||||| || |||||| Sbjct 293141 GTCTTGCCTGTAAGCGTCTTTACGAATATCTGCATT 293106 >seq2 Length=77616 Score = 102 bits (112), Expect = 8e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 64229 CTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCG 64288 || ||||| ||||||||||| ||| || ||||||||||| |||| | || | | Sbjct 15622 CTGAGCACCAGATGAATCGTGCTTTCCTTCTGAATGTTGTAGTCTGAAAGTGTCCTTCCA 15563 Query 64289 TCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTT 64348 || ||||||||||| ||||| | || || | |||||||| | ||| ||||| || || Sbjct 15562 TCCTCAAGCTGCTTTCCGGCGAAGATAAGTCTTTGCTGGTCAGAAGGTATTCCCTCCTTG 15503 Query 64349 TCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACG 64408 || || || ||| |||||| ||| | ||| ||| | | || || | || | Sbjct 15502 TCCTGAATCTTTGCCTTTACGTTCTCTATTGTGTCAGTGCTTTGGACGTCAATGGTGATT 15443 Query 64409 GTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 |||||||| || | || |||||||| || |||||| Sbjct 15442 GTCTTGCCTGTAAGCGTCTTTACGAATATCTGCATT 15407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499644537686480