Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20displodere_20[genbank_20GCA_5F001642395.1_202016-05-11] 42 sequences; 3,066,400 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq12 89.7 5e-13 seq2 86.0 6e-12 >seq12 Length=514210 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 ||||| ||| ||||| || || ||||| ||||| || | || | ||| || Sbjct 293316 CACCAGATGAATCGTGCTTTCCTTCTGAATGTTGTAGTCTGAAAGTGTCCTTCCATCCTC 293257 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 ||||| ||||| ||| |||| | || ||||| || | |||||| |||||||||||| | Sbjct 293256 AAGCTGCTTTCCGGCGAAGATAAGTCTTTGCTGGTCAGAAGGTATTCCCTCCTTGTCC-T 293198 Query 127024 GATTTTCTG-CTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTT 127082 || | | || ||| | | || | ||||| || || | ||| || | ||| | ||| | Sbjct 293197 GAATCTTTGCCTTTACGTTCTCTATTGTGTCAGTGCTTTGGACGTCAATGGTGATCGTCT 293138 Query 127083 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || || || ||||| || |||||||| Sbjct 293137 TGCCTGTAAGCGTCTTTACGAATATCTGCAT 293107 >seq2 Length=77616 Score = 86.0 bits (94), Expect = 6e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 ||||| ||| ||||| || || ||||| ||||| || | || | ||| || Sbjct 15617 CACCAGATGAATCGTGCTTTCCTTCTGAATGTTGTAGTCTGAAAGTGTCCTTCCATCCTC 15558 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 ||||| ||||| ||| |||| | || ||||| || | |||||| |||||||||||| | Sbjct 15557 AAGCTGCTTTCCGGCGAAGATAAGTCTTTGCTGGTCAGAAGGTATTCCCTCCTTGTCC-T 15499 Query 127024 GATTTTCTG-CTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTT 127082 || | | || ||| | | || | ||||| || || | ||| || | ||| | || | Sbjct 15498 GAATCTTTGCCTTTACGTTCTCTATTGTGTCAGTGCTTTGGACGTCAATGGTGATTGTCT 15439 Query 127083 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || || || ||||| || |||||||| Sbjct 15438 TGCCTGTAAGCGTCTTTACGAATATCTGCAT 15408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500550362080