Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20displodere_20[genbank_20GCA_5F001642395.1_202016-05-11] 42 sequences; 3,066,400 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq34 154 2e-32 seq4 143 3e-29 >seq34 Length=240578 Score = 154 bits (170), Expect = 2e-32 Identities = 621/957 (65%), Gaps = 26/957 (3%) Strand=Plus/Plus Query 116245 ACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGA 116304 |||||||| || || || || || ||||| || || || || || | |||||| | || Sbjct 162961 ACATCCGCCAGGCCCTGAACTCCAAGGCCGATCGGCCGGTGCCTTAGATTAGAGTGCCGC 163020 Query 116305 GCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACC 116364 | ||| | ||| || || ||| || | | || || ||||| |||||| Sbjct 163021 GACTCCTCAAGGGGGTACTTGTTAACATCAATGATTTTGTTCAGGTTTTTAACAACAACC 163080 Query 116365 TTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTC-TCTTCATTG-ACAT--A 116420 || | |||| | | ||||| | | ||||| |||| | | || | | | | || | Sbjct 163081 TTAACGGTTTCTTTCAACTTTTGGAAGTCAAA-CTGCAAAGCGTCCCCCTCGGAAATGAA 163139 Query 116421 CTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTC 116480 | || || || || |||||||||||||| || | |||| || || |||| Sbjct 163140 GGTTGGTAGCGCCATGGACGCCAGATTACAAACTGCTATCTCCTCTGGGCTGGTAAACTC 163199 Query 116481 TATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTT 116540 | || || | ||| | ||| | ||| || || || | |||||| || || ||| Sbjct 163200 AACTATCTCTGCACAAAGATTGCTTCCCTTGATAGTCCCAAGGTTCTTCTGGTTGCTCTT 163259 Query 116541 TGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAG 116600 ||| || ||||||||||| || || ||| |||||||| | | | || || Sbjct 163260 CCGGTTGCAGCTGTCCTTGTAGAGGATGTAGGGCACGCCCGTCTCAATCTCAGCCTCCAG 163319 Query 116601 AATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTC-GCCCCTCCTCCTCG 116658 ||| |||||| | | || ||| | | ||| | || ||| | | ||||| |||| Sbjct 163320 AATGAACTTCCAAAGCTTCCGCGCC-GAAACACTC-CGCCGGCCCAGACCCTCTCGCTCG 163377 Query 116659 TACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCCTC-TGAGAGCCCTGGTGCCTT 116717 ||| | || | ||| ||||||| || || | |||| ||| ||||| | |||| Sbjct 163378 TACCTCTCATACAAAGCCACAAACTCGTCCCCATAAACCTCGTGAAGGCCCTTG-GCCTG 163436 Query 116718 ATCTGGACAGAAGAGAGACCATTGACCAC--CCTCCTCAACCCGCTTCATGAAGAGGTCT 116775 || |||||||| || | ||| | ||| | ||||| ||||||| |||||| | || Sbjct 163437 GTCCGGACAGAAAAGCGTCCACT--CCAAGTCGTCCTCCACCCGCTGCATGAACAAATCG 163494 Query 116776 GGGATCCAGAGCGCCGAGAAGAGA-TCCCGACAGCGAGCT--TCTTCATCCCCCTGATTG 116832 || ||||| |||||| ||| | | ||| | | ||||| |||| | ||| || || Sbjct 163495 GGTATCCACAGCGCCAGGAACAAACTCCGGGCTCTGAGCTCGTCTT--TGCCCGTGTTTT 163552 Query 116833 AGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATT 116892 | || ||||| ||||| | || ||| | ||||||||| |||||||| ||| | || Sbjct 163553 TC-CTCAGCTCCAGGAAGTCAAAGACATCGGGGTGCCACGGCTCCAGGTAGACCACAATG 163611 Query 116893 GACCCCTTGCGACGA----CCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCG 116948 || || | || | || |||||| |||||||| | || || | ||| || || Sbjct 163612 GAGCC-TGGCCGCTTGTTGCCCCCCTGGTCCACATACCTTGAGGTCGCATCAAAGACCCG 163670 Query 116949 AAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGC 117008 |||||| || | | || | || || ||| || ||| || || ||| |||| Sbjct 163671 AAGCATCGGCACAAGCCCGTTCGAGTGCCCAAAGGTGCCCTTGATGTAGGAGTTGCTGGC 163730 Query 117009 TCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTC 117068 || || | ||||||| | ||||| ||||| || ||| |||||| | ||||||| Sbjct 163731 TCGGATGTTGTGGATGCTGACGCCAATGCCCCCAGCGTGCTTGGAGATTAGCGCGCACTG 163790 Query 117069 CGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCT 117128 | | || | ||||||||||||||| ||||| | | | | | | || ||||| Sbjct 163791 CTTAAGCGTTGAGTAGATCCCATCGATTGAGTCGCTTTGCATAGATAGCAAAAAACAGCT 163850 Query 117129 CGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAA 117185 || | ||||| | ||| || ||||| || || ||||| || || |||||||| Sbjct 163851 TGATAGCTGTGGAGATACTGTCCCGGCGTTAAAAAGAGTTGGCGTAGCATGGATGAA 163907 >seq4 Length=66353 Score = 143 bits (158), Expect = 3e-29 Identities = 501/765 (65%), Gaps = 24/765 (3%) Strand=Plus/Minus Query 127240 GACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCT-GATATTCTCCATAAAATCAA 127298 ||||| ||||||||||||||| | ||| || ||| || ||| | ||||||||| || | Sbjct 59811 GACCCTCTTCTCGAAGAAGTTGGACTTTCC-TCGCAGCGAGATGTACTCCATAAAGTCGA 59753 Query 127299 ATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGGAGACGATCCGAGA 127358 ||||||||| | ||| | || ||||| | |||| | || || || || | | Sbjct 59752 ATGGGTTCTGGGCGTTGTATATCTTTGGCTCGCCAAGCGAGAGAAGAAGCCGGTCAGCAA 59693 Query 127359 CGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG-GTTACATGGGAGC 127417 | |||||||||||| |||| | || || || || ||||| | || ||||| Sbjct 59692 CAAACTCAATGTACTGGCACATAGTATCGACATTGATGCCAATGAGAGAGACG-GGGAGA 59634 Query 127418 GCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGTGAATAGTG 127477 || || | | |||| | |||||||| | || || || ||||| | || | Sbjct 59633 GCCTCGCATAAGAACTCTTTCTCAATTACAACGGCCTCTTCAACGATTTTCTTGATTTTA 59574 Query 127478 TC-CACCCCAGGTCTAT-TGCGTAAAGTCTTGAAGAGTTCCACAGCAAACTCTTGGTGGA 127535 || ||| || || |||| ||| | | || || |||||| || || | Sbjct 59573 TCGCACTTGTTGTTTAGGTGCG---AGTGTAGTAGG----CA-AGCAAAGTCGCAATGAA 59522 Query 127536 GACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCT 127595 | || ||||| ||| ||| || || || |||||| || || ||||| || || || | Sbjct 59521 GGCCTTCGTCTCGGCTGATAAGCTCGTTAGAGAAGGTTAGCCCAGGCATAAGTCCTCGTT 59462 Query 127596 TCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGA 127655 |||| | |||||| || || |||||| || ||||||||||| || || ||||| || | Sbjct 59461 TCTTGAGCCAGAAGATAGCTGCAAATGACCCGGAGAAGAAGATGCCTTCAACACAGGCAA 59402 Query 127656 ACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATC---AAACCACTTCATCGCCC 127712 | || | ||| ||||| |||| ||| || ||| | ||| | |||| || ||||| Sbjct 59401 AGGCCACTAGCCGCTCTGCAA---AGCTGGCCTTAGCATCTGATATCCACCGCAGCGCCC 59345 Query 127713 ACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTTT 127772 | | |||||| || | || |||| | ||| || || | ||| | |||||| Sbjct 59344 AGTCTGCCTTCTTTTTTATGACCGGGATGTTCTCAATGGCATTAAACAAGAAAGTCTTTT 59285 Query 127773 C-TGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTGGACCATT 127831 | ||| || ||||||||| | || |||||| || || | || |||||| | Sbjct 59284 CGCTCTGGCTC-TTGATGTACGTGTCAATGAGTAGGGAGTACATCTCAGCGTGGATGTTC 59226 Query 127832 TCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATCGGCA 127891 ||| | ||| | ||||||| | || ||||| || || || |||||| |||| Sbjct 59225 TCAATCATAATCTGGAAGCCGTAGAAGCATCGAGCTTCACTGATTTGCACCTCAGAGGCA 59166 Query 127892 AAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCCAGGATA 127951 || | | | | || ||| ||||||||| || || | ||||| || || |||| Sbjct 59165 AACCTTTCAACCAGGTTTTCATTAACAATTCCGTCAGAGGCGGCAAAGAAGGCGAGGACG 59106 Query 127952 TACTTTATGAA-TTTCTGTTCATTCTCGTTCAGGGTCTTCCAGTC 127995 || ||||| | ||| ||| || |||| || ||| |||||| Sbjct 59105 TAGGAAATGAAGTGTCT-TTCGTTGGCGTTAAGCTTCTCCCAGTC 59062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613506877908720