Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20displodere_20[genbank_20GCA_5F001642395.1_202016-05-11] 42 sequences; 3,066,400 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq4 143 4e-29 >seq4 Length=66353 Score = 143 bits (158), Expect = 4e-29 Identities = 375/569 (66%), Gaps = 5/569 (1%) Strand=Plus/Minus Query 159917 AGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATG 159976 || ||||| ||||||||||| || || || ||||| || ||| | |||||| || | | Sbjct 59546 AGTAGGCAAGCAAAGTCGCAATGAAGGCCTTCGTCTCGGCTGATAAGCTCGTTAGAGAAG 59487 Query 159977 ATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTA 160036 | || || ||||| | || || |||||||| || || || ||||| | ||| Sbjct 59486 GTTAGCCCAGGCATAAGTCCTCGTTTCTTGAGCCAGAAGATAGCTGCAAATGACCCGGAG 59427 Query 160037 AAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTG 160096 || ||||| || || || ||||| ||||| |||| ||| |||| ||| || | Sbjct 59426 AAGAAGATGCCTTCAACACAGGCAAAGGCCACTAGCCGCTCTGCAAAGCTGGCCTTAGCA 59367 Query 160097 TCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACG 160156 || |||||| ||||| || ||||||||| ||| ||| ||| ||| | | Sbjct 59366 TCTGATATCCACCGCAGCGCCCAGTCTGCCTTCTTTTTTATGACCGGGATGTTCTCAATG 59307 Query 160157 GCGTTAAACAATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAG 160216 || |||||||| || || || |||||| || |||| || ||| Sbjct 59306 GCATTAAACAAGAAAGTCTTTTCGCTCTGGCTCTTGATGTACGTGTCAATGAGTAGGGAG 59247 Query 160217 TACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTC- 160275 ||||| || ||||| | || || || ||||| ||| |||||| || || || Sbjct 59246 TACATCTCAGCGTGGATGTTCTCAATCATAATCTGGAAGCCGTAGAAGCATCGAGCTTCA 59187 Query 160276 CAGATACTGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGC 160335 | ||| |||||||| | ||||||| | |||| || ||||||| | ||||| | Sbjct 59186 CTGAT-TTGCACCTCAGAGGCAAACCTTTCAACCAGGTTTTCATTAACAATTCCGTCAGA 59128 Query 160336 GGCCGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTT 160395 ||| |||||||| || | |||| || ||||| ||||| |||| ||| || ||| Sbjct 59127 GGCGGCAAAGAAGGCGAGGACGTAGGAAATGAAGTGTCTTTCGTTGGCGTTAAG---CTT 59071 Query 160396 TTCCCAGTGTGTCACGTCTTGGGCCAAATCAACCTCTTCCGCGCTCCAATTGGCAGCCTG 160455 ||||||| | || |||| | | || || ||||| ||| |||| |||| Sbjct 59070 CTCCCAGTCAGCCATGTCTCTTCCAAGGTCGACTTCTTCTGCGGTCCAGAAACTAGCCAC 59011 Query 160456 AGCAGTTTTGTACATGGCCCAGATGGCGT 160484 || ||||||||||| ||||||| ||| Sbjct 59010 TGCGTTTTTGTACATGTTCCAGATGTCGT 58982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795154782543520