Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20displodere_20[genbank_20GCA_5F001642395.1_202016-05-11] 42 sequences; 3,066,400 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq4 192 6e-44 seq12 102 8e-17 seq2 102 8e-17 >seq4 Length=66353 Score = 192 bits (212), Expect = 6e-44 Identities = 405/592 (68%), Gaps = 14/592 (2%) Strand=Plus/Minus Query 132894 GCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAA 132953 |||||||||||||||||| | ||| ||||| | | || || ||||| ||| || | Sbjct 59541 GCAAGCAAAGTCGCAATGAAGGCCTTCGTCTCGGCTGATAAGCTCGTTAGAGAAGGTTAG 59482 Query 132954 GCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAA 133013 || ||||| || || ||||| |||||||| || || || || || || || ||||| Sbjct 59481 CCCAGGCATAAGTCCTCGTTTCTTGAGCCAGAAGATAGCTGCAAATGACCCGGAGAAGAA 59422 Query 133014 GACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGC 133073 || ||| || || || || ||||| || ||||| | || |||| ||| || Sbjct 59421 GATGCCTTCAACACAGGCAAAGGCCACTAGCCGCTCTGCAAAGCTGGC--CTTAGCATCT 59364 Query 133074 GAT--CCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCG 133131 ||| ||| ||||||||||| || ||||| | ||| | | ||| || | || ||||| Sbjct 59363 GATATCCACCGCAGCGCCCAGTCTGCCTTCTTTTTTATGACCGGGATGTTCTCAATGGCA 59304 Query 133132 TTCAACAA--ACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAAT 133189 || ||||| | | |||| || | | | ||| ||||| ||||| || | Sbjct 59303 TTAAACAAGAAAGTCTTTTCGCT--CTGGCTCTTGATGTACGTGTCAATGAGTAGGGAGT 59246 Query 133190 ACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGA 133249 |||| || | ||| | |||||| || || || |||||||| ||||| || || || Sbjct 59245 ACATCTCAGCGTGGATGTTCTCAATCATAATCTGGAAGCCGTAGAAGCATCGAGCTTCAC 59186 Query 133250 CCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGG 133309 | ||||| || || || | || ||||| ||||| || || || ||||| || Sbjct 59185 TGATTTGCACCTCAGAGGCAAACCTTTCAACCAGGTTTTCATTAACAATTCCGTCAGAGG 59126 Query 133310 CGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCG-CTCC 133368 |||| || ||||| || |||| ||||| || | |||||| |||| |||| |||| Sbjct 59125 CGGCAAAGAAGGCGAGGACGTAGGAAATGAAGTGTCTTTCGTTGGCGTT-AAGCTTCTCC 59067 Query 133369 CAGTCGCGCGTGTC-CTTGGACAGGTCCACCTCCTCGACGGTCCA-AAACGACGCCTCGG 133426 ||||| | |||| ||| | ||||| || || || ||||||| |||| | ||| | | Sbjct 59066 CAGTCAGCCATGTCTCTTCCA-AGGTCGACTTCTTCTGCGGTCCAGAAACTA-GCCACTG 59009 Query 133427 CTTTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAA 133478 | ||||||||||| |||| ||||| | || || | ||||| || ||||| Sbjct 59008 CGTTTTTGTACATGTTCCAGATGTCGTAGTACTGCACTGGAAAGATGACAAA 58957 >seq12 Length=514210 Score = 102 bits (112), Expect = 8e-17 Identities = 155/216 (72%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| ||||||||||| ||||| || ||||| || |||||| | |||||| | ||| Sbjct 293106 AATGCAGATATTCGTAAAGACGCTTACAGGCAAGACGATCACCATTGACGTCCAAAGCAC 293165 Query 38303 CGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | |||| | || | ||| || | ||||| |||||||| || | |||| Sbjct 293166 TGACACAATAGAGAACG-TAAAGGCAAAGATTCAGGACAAGGAGGGAATACCTTCTGACC 293224 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACG--AGCGCACCCTCAACGACTA 38419 | || | || || | ||| || || ||||| || || | || ||| ||| ||||| Sbjct 293225 AGCAAAGACTTATCTTCGCCGGAAAGCAGCTTGAGGATGGAAGGACACTTTCA--GACTA 293282 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 |||||| || |||||| ||| | ||| ||||||| Sbjct 293283 CAACATTCAGAAGGAAAGCACGATTCATCTGGTGCT 293318 >seq2 Length=77616 Score = 102 bits (112), Expect = 8e-17 Identities = 155/216 (72%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| ||||||||||| ||||| || ||||| || |||||| | |||||| | ||| Sbjct 15407 AATGCAGATATTCGTAAAGACGCTTACAGGCAAGACAATCACCATTGACGTCCAAAGCAC 15466 Query 38303 CGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | |||| | || | ||| || | ||||| |||||||| || | |||| Sbjct 15467 TGACACAATAGAGAACG-TAAAGGCAAAGATTCAGGACAAGGAGGGAATACCTTCTGACC 15525 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACG--AGCGCACCCTCAACGACTA 38419 | || | || || | ||| || || ||||| || || | || ||| ||| ||||| Sbjct 15526 AGCAAAGACTTATCTTCGCCGGAAAGCAGCTTGAGGATGGAAGGACACTTTCA--GACTA 15583 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 |||||| || |||||| ||| | ||| ||||||| Sbjct 15584 CAACATTCAGAAGGAAAGCACGATTCATCTGGTGCT 15619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172537409280