Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20displodere_20[genbank_20GCA_5F001642395.1_202016-05-11] 42 sequences; 3,066,400 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq34 141 1e-28 seq4 132 6e-26 >seq34 Length=240578 Score = 141 bits (156), Expect = 1e-28 Identities = 569/873 (65%), Gaps = 31/873 (4%) Strand=Plus/Plus Query 106455 TTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTG-TGTACTCT 106513 |||| || || || || |||| ||| ||||| || |||| || | ||| | |||| Sbjct 163142 TTGGTAGCGCCATGGACGCCAGATTACAAACTGCTATCTCCTC-TGGGCTGGTAAACTCA 163200 Query 106514 AAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTT 106573 | || |||| ||| | ||| | ||| || ||||| | ||||| ||||| ||||| Sbjct 163201 ACTATCTCTGCACAAAGATTGCTTCCCTTGATAGTCCCAAGGTTCTTCTGGTTGCTCTTC 163260 Query 106574 TTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGA 106633 |||||| ||||||||||| ||||||||| |||||||| ||| | || ||| Sbjct 163261 CGGTTGCAGCTGTCCTTGTAGAGGATGTAGGGCACGCCCGTCTCAATCTCAGCCTCCAGA 163320 Query 106634 ATTGCCTTCCACA-CATCGGCGGCTGGTACAATGGCGTTGGCCC-GTCCCTCCGCCTCGT 106691 || |||||| | | || || || | ||| | || ||||| | ||||| ||||| Sbjct 163321 ATGAACTTCCAAAGCTTCCGC-GCCGAAACACT-CCGCCGGCCCAGACCCTCTCGCTCGT 163378 Query 106692 ACTTTGTGTAGAGGGCTTCAAACTCCTCACC---CACCGCGTCGGAGAGACCTGGTGCCT 106748 || | || | || ||||||| || || ||| ||| || | ||| | |||| Sbjct 163379 ACCTCTCATACAAAGCCACAAACTCGTCCCCATAAACCTCGT--GAAGGCCCTTG-GCCT 163435 Query 106749 TGTCTGGACAGAAAAGAGACCATTGACCA--CCCTCCTCAACCCGCTTCATGAAAAGGTC 106806 ||| ||||||||||| | ||| | ||| | ||||| ||||||| |||||| | || Sbjct 163436 GGTCCGGACAGAAAAGCGTCCACT--CCAAGTCGTCCTCCACCCGCTGCATGAACAAATC 163493 Query 106807 TGGAATCCACAGGG--ATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTG 106864 || |||||||| | | ||| | | || | | ||| ||| || | || ||| Sbjct 163494 GGGTATCCACAGCGCCAGGAACA-AACTCCGGGCTCTGAG-CTCGTCTTTGCCCGTGTTT 163551 Query 106865 AGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATA 106924 | | ||| ||||| || | || ||| | |||||| ||||| || ||||| | || Sbjct 163552 TTCCTCAGCTCCAGGAAGTCAAAGACATCGGGGTGCCACGGCTCCAGGTAGACCACAATG 163611 Query 106925 GATC----CCTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCG 106980 || | || | | |||| | || | ||||| | | || || | ||| || || Sbjct 163612 GAGCCTGGCCGCTTGTTGCCC-CCCTGGTCCACATACCTTGAGGTCGCATCAAAGACCCG 163670 Query 106981 AAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGC 107040 |||||| || | || || | || || ||| || ||| || || || |||| Sbjct 163671 AAGCATCGGCACAAGCCCGTTCGAGTGCCCAAAGGTGCCCTTGATGTAGGAGTTGCTGGC 163730 Query 107041 TCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTC 107100 || | | |||||| | ||||| |||||||| ||| |||||| |||| |||| Sbjct 163731 TCGGATGTTGTGGATGCTGACGCCAATGCCCCCAGCGTGCTTGGAGATTAGCGCGCACTG 163790 Query 107101 CGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTG-TTGGCGATAAGGAAGCAAC 107159 | |||| ||| ||||| || | |||||||| | | ||| | | | | || || | Sbjct 163791 CTTAAGCGTTGAGTAGATCCCATCGATTGAGT-CGCTTTGCATAGATAGCAAAAAACAGC 163849 Query 107160 TGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACA 107219 | || | ||| || | ||| || || || || || ||||| || || || |||| | Sbjct 163850 TTGATAGCTGTGGAGATACTGTCCCGGCGTTAAAAAGAGTTGGCGTAGCATGGATGA--A 163907 Query 107220 TACCTTGG--GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGAT 107277 ||||| ||||| | || ||||| | | | |||||| || ||| ||| || Sbjct 163908 GTGCTTGGTTGACATGAGCTGATACGTCTCAATCGCTGCATCAATATCCTCCATGTGTAT 163967 Query 107278 GCCGATGGCCACACGCATAAACATGTATTGGGG 107310 || | |||||| ||||| ||||||| || || Sbjct 163968 TCCCACGGCCACCCGCATCCACATGTACTGCGG 164000 >seq4 Length=66353 Score = 132 bits (146), Expect = 6e-26 Identities = 300/439 (68%), Gaps = 18/439 (4%) Strand=Plus/Minus Query 117000 CTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTA-ATGTTTTCCATAAAGTCAAATGGAT 117058 |||||| |||||||||| ||| || || || | |||| ||||||||||| ||||| | Sbjct 59805 CTTCTCGAAGAAGTTGGACTTTCC-TCGCAGCGAGATGTACTCCATAAAGTCGAATGGGT 59747 Query 117059 TCTTCGCGTTCCAAATGGGTGGCACCCCAACTTGTTTGAGGAGA---CGATCCGACACAT 117115 ||| ||||| | || |||| | |||| | ||| ||| || || | ||| Sbjct 59746 TCTGGGCGTTGTATATCTTTGGCTCGCCAA---GCGAGAGAAGAAGCCGGTCAGCAACAA 59690 Query 117116 ACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTACATGGGAGTGCGT 117175 |||||||||||| | |||| | || || || || |||||| ||||| || | Sbjct 59689 ACTCAATGTACTGGCACATAGTATCGACATTGATGCCAATGAGAGAGACGGGGAGAGCCT 59630 Query 117176 CCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTGGATAGTTTCGG 117235 | | | |||| |||||||||| |||| ||||||| ||||| | ||| | ||| Sbjct 59629 CGCATAAGAACTCTTTCTCAATTACAACGGCCTCTTCAACGATTTTCTTGATTTTATCGC 59570 Query 117236 TAGTGGGTCTATTACGCAA-AGTCTTGAAGAGCTCCACGGCAAACTCCTGGTGGAGACCC 117294 | | | | | ||| | ||| | | || || | |||| || || || || Sbjct 59569 -ACTTGTTGT-TTAGGTGCGAGTGTAGTAGG----CAAG-CAAAGTCGCAATGAAGGCCT 59517 Query 117295 TCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTCTTC 117354 || |||||| ||||| || || |||||| ||| || ||||| || || || ||||| Sbjct 59516 TCGTCTCGGCTGATAAGCTCGTTAGAGAAGGTTAGCCCAGGCATAAGTCCTCGTTTCTTG 59457 Query 117355 AACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAACGC 117413 | ||| | ||||| ||| |||||||||||||||||||| || || ||||| ||||| || Sbjct 59456 AGCCAGAAGATAGCTGCA-AATGACCCGGAGAAGAAGATGCCTTCAACACAGGCAAAGGC 59398 Query 117414 AAAAAGGCGCTCGGCGAAG 117432 | || ||||| || ||| Sbjct 59397 CACTAGCCGCTCTGCAAAG 59379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980490260080