Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20displodere_20[genbank_20GCA_5F001642395.1_202016-05-11] 42 sequences; 3,066,400 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1 150 4e-31 seq12 145 2e-29 seq2 140 7e-28 >seq1 Length=651558 Score = 150 bits (166), Expect = 4e-31 Identities = 166/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 ||||| || | |||||||| | ||| || || ||||| |||||||| ||||||||| Sbjct 630365 CTGAGCCTGAGCACAAGGTGGATGGTGCTTTCCTTCTGAATGTTGTAATCTGCAAGAGTT 630424 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 || || || || |||||||| || || || ||||| | || ||||| ||||| |||||| Sbjct 630425 CTTCCGTCCTCAAGCTGCTTCCCGGCAAAAATAAGCCTCTGCTGGTCGGGAGGGATGCCT 630484 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGG 195099 |||||||| || ||||| ||| || | |||| ||||| ||| | ||||| || | | Sbjct 630485 TCTTTGTCCTGGATTTTGGTCTTCACAGTGTCAACCGTGTCTGAATTCTCCACGTCTAAG 630544 Query 195100 GTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| ||||| ||||| | || |||||||| | ||||| Sbjct 630545 GTAATGGTCTTGCCTGTGAGTGTCTTTACGAAGATCTGCAT 630585 >seq12 Length=514210 Score = 145 bits (160), Expect = 2e-29 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || |||| ||| || || ||||| ||||| || | ||| || || ||||| || Sbjct 293315 ACCAGATGAATCGTGCTTTCCTTCTGAATGTTGTAGTCTGAAAGTGTCCTTCCATCCTCA 293256 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || ||||||||||||| ||| ||||| | ||| || || || ||||| ||| Sbjct 293255 AGCTGCTTTCCGGCGAAGATAAGTCTTTGCTGGTCAGAAGGTATTCCCTCCTTGTCCTGA 293196 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || ||| ||| |||||||| || ||||| | |||| || |||| ||| | |||||| Sbjct 293195 ATCTTTGCCTTTACGTTCTCTATTGTGTCAGTGCTTTGGACGTCAATGGTGATCGTCTTG 293136 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||||| | || |||||||| | |||||| Sbjct 293135 CCTGTAAGCGTCTTTACGAATATCTGCATT 293106 >seq2 Length=77616 Score = 140 bits (154), Expect = 7e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || |||| ||| || || ||||| ||||| || | ||| || || ||||| || Sbjct 15616 ACCAGATGAATCGTGCTTTCCTTCTGAATGTTGTAGTCTGAAAGTGTCCTTCCATCCTCA 15557 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || ||||||||||||| ||| ||||| | ||| || || || ||||| ||| Sbjct 15556 AGCTGCTTTCCGGCGAAGATAAGTCTTTGCTGGTCAGAAGGTATTCCCTCCTTGTCCTGA 15497 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || ||| ||| |||||||| || ||||| | |||| || |||| ||| | ||||| Sbjct 15496 ATCTTTGCCTTTACGTTCTCTATTGTGTCAGTGCTTTGGACGTCAATGGTGATTGTCTTG 15437 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||||| | || |||||||| | |||||| Sbjct 15436 CCTGTAAGCGTCTTTACGAATATCTGCATT 15407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109481002960214