Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20displodere_20[genbank_20GCA_5F001642395.1_202016-05-11] 42 sequences; 3,066,400 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq12 114 8e-21 seq2 114 8e-21 >seq12 Length=514210 Score = 114 bits (126), Expect = 8e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34754 TCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGA 34813 |||||||| | ||| | |||| ||||| |||||||| ||||||||||| ||||| || Sbjct 293334 TCCTCCCCGGAGCCTGAGCACCAGATGAATCGTGCTTTCCTTCTGAATGTTGTAGTCTGA 293275 Query 34814 AAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGG 34873 ||| | | | |||| || ||||| |||||||| || || |||| ||||||||| || Sbjct 293274 AAGTGTCCTTCCATCCTCAAGCTGCTTTCCGGCGAAGATAAGTCTTTGCTGGTCAGAAGG 293215 Query 34874 CACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAAC 34933 | ||||||||||| |||||| || ||| |||| | ||| | | || Sbjct 293214 TATTCCCTCCTTGTCCTGAATCTTTGCCTTTACGTTCTCTATTGTGTCAGTGCTTTGGAC 293155 Query 34934 ATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | ||| || || || || || || ||||| || || |||||||| Sbjct 293154 GTCAATGGTGATCGTCTTGCCTGTAAGCGTCTTTACGAATATCTGCAT 293107 >seq2 Length=77616 Score = 114 bits (126), Expect = 8e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34754 TCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGA 34813 |||||||| | ||| | |||| ||||| |||||||| ||||||||||| ||||| || Sbjct 15635 TCCTCCCCGGAGCCTGAGCACCAGATGAATCGTGCTTTCCTTCTGAATGTTGTAGTCTGA 15576 Query 34814 AAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGG 34873 ||| | | | |||| || ||||| |||||||| || || |||| ||||||||| || Sbjct 15575 AAGTGTCCTTCCATCCTCAAGCTGCTTTCCGGCGAAGATAAGTCTTTGCTGGTCAGAAGG 15516 Query 34874 CACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAAC 34933 | ||||||||||| |||||| || ||| |||| | ||| | | || Sbjct 15515 TATTCCCTCCTTGTCCTGAATCTTTGCCTTTACGTTCTCTATTGTGTCAGTGCTTTGGAC 15456 Query 34934 ATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | ||| || || || || || || ||||| || || |||||||| Sbjct 15455 GTCAATGGTGATTGTCTTGCCTGTAAGCGTCTTTACGAATATCTGCAT 15408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324633433828176