Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20displodere_20[genbank_20GCA_5F001642395.1_202016-05-11] 42 sequences; 3,066,400 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq4 192 7e-44 >seq4 Length=66353 Score = 192 bits (212), Expect = 7e-44 Identities = 420/620 (68%), Gaps = 12/620 (2%) Strand=Plus/Minus Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020 || ||||| || ||||| || || ||||||| || || | || ||||| || |||| Sbjct 59540 CAAGCAAAGTCGCAATGAAGGCCTTCGTCTCGGCTGATAAGCTCGTTAGAGAAGGTTAGC 59481 Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAAT 19080 |||||||| ||||||| ||| || | |||||| |||| |||||||| || || ||||| Sbjct 59480 CCAGGCATAAGTCCTCGTTTCTTGAGCCAGAAGATAGCTGCAAATGACCCGGAGAAGAAG 59421 Query 19081 ATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGA 19140 || ||||| || ||||| || ||||| | ||| || | || || | | || ||| Sbjct 59420 ATGCCTTCAACACAGGCAAAGGCCACTAGCCGCTCTGCAAAGCTGGCCTTAGCATC-TGA 59362 Query 19141 -ATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATT 19199 ||||| ||| ||||| || ||||||||||||| || || |||| || | ||| Sbjct 59361 TATCCACCGCAGCGCCCAGTCTGCCTTCTTTTTTATGACCGGGATGTTCTCAATGGCATT 59302 Query 19200 AAA-TAGA---TACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGT 19255 ||| ||| | | ||| |||| || || | || | || || | || || Sbjct 59301 AAACAAGAAAGTCTTTTCGC---TCTGGCTC-TTGATGTACGTGTCAATGAGTAGGGAGT 59246 Query 19256 ACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTG 19315 |||| || | || || || || || ||||| || ||||| || |||| ||||| Sbjct 59245 ACATCTCAGCGTGGATGTTCTCAATCATAATCTGGAAGCCGTAGAAGCATCGAGCTTCAC 59186 Query 19316 TTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAG 19375 | || || || ||| ||| ||||| |||| ||||||||||| ||||| ||| | Sbjct 59185 TGATTTGCACCTCAGAGGCAAACCTTTCAACCAGGTTTTCATTAACAATTCCGTCAGAGG 59126 Query 19376 CTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAA-TGTATTC 19434 | ||||| || || | || | ||| || ||| |||| | || ||||| | | | Sbjct 59125 CGGCAAAGAAGGCGAGGACGTAGGAAATGAAGTGTCTTTCGT-TGGCGTTAAGCTTCTCC 59067 Query 19435 CAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCT 19494 || ||| || ||| | | || |||||||| | ||||| ||| |||| |||| Sbjct 59066 CAGTCAGCCATGTCTCTTCCAAGGTCGACTTCTTCTGCGGTCCAGAAACTAGCCACTGCG 59007 Query 19495 TTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTA 19554 ||||| ||||||||||| || || || || | ||||| || |||||||||| | Sbjct 59006 TTTTTGTACATGTTCCAGATGTCGTAGTACTGCACTGGAAAGATGACAAATCTATCCGTG 58947 Query 19555 TTTTCTTTAAGAATAGGTTC 19574 | |||| |||||||| || Sbjct 58946 CTCTCTTCTAGAATAGGCTC 58927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108504892880