Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20displodere_20[genbank_20GCA_5F001642395.1_202016-05-11] 42 sequences; 3,066,400 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq12 116 3e-20 seq2 116 3e-20 seq1 114 1e-19 >seq12 Length=514210 Score = 116 bits (128), Expect = 3e-20 Identities = 161/223 (72%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGT 563312 || ||| | ||| || ||||||| || ||||| || ||| ||||| || | || || Sbjct 293328 CCGGAGCCTGAGCACCAGATGAATCGTGCTTTCCTTCTGAATGTTGTAGTCTGAAAGTGT 293269 Query 563313 TCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCC 563372 ||| ||| ||||| || |||||||| || |||||||||||||| |||| ||| ||||| Sbjct 293268 CCTTCCATCCTCAAGCTGCTTTCCGGCGAAGATAAGTCTTTGCTGGTCAGAAGGTATTCC 293209 Query 563373 TTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTG-TGAGTACATTCGA 563431 || || || ||||| ||| ||||| ||| ||||| |||||| | | || || | Sbjct 293208 CTCCTTGTCCTGAATCTTTGCCTTTACGTTCTCTATTGTGTCAGTGCTTTGGAC-GTCAA 293150 Query 563432 GAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || | || || || ||||| || || ||||| || ||||| Sbjct 293149 TGGTGATCGTCTTGCCTGTAAGCGTCTTTACGAATATCTGCAT 293107 >seq2 Length=77616 Score = 116 bits (128), Expect = 3e-20 Identities = 161/223 (72%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGT 563312 || ||| | ||| || ||||||| || ||||| || ||| ||||| || | || || Sbjct 15629 CCGGAGCCTGAGCACCAGATGAATCGTGCTTTCCTTCTGAATGTTGTAGTCTGAAAGTGT 15570 Query 563313 TCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCC 563372 ||| ||| ||||| || |||||||| || |||||||||||||| |||| ||| ||||| Sbjct 15569 CCTTCCATCCTCAAGCTGCTTTCCGGCGAAGATAAGTCTTTGCTGGTCAGAAGGTATTCC 15510 Query 563373 TTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTG-TGAGTACATTCGA 563431 || || || ||||| ||| ||||| ||| ||||| |||||| | | || || | Sbjct 15509 CTCCTTGTCCTGAATCTTTGCCTTTACGTTCTCTATTGTGTCAGTGCTTTGGAC-GTCAA 15451 Query 563432 GAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || | || || || ||||| || || ||||| || ||||| Sbjct 15450 TGGTGATTGTCTTGCCTGTAAGCGTCTTTACGAATATCTGCAT 15408 >seq1 Length=651558 Score = 114 bits (126), Expect = 1e-19 Identities = 108/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGT 563312 |||||| | ||| ||||| || | ||| ||||| || ||| |||||||| || ||||| Sbjct 630364 CCTGAGCCTGAGCACAAGGTGGATGGTGCTTTCCTTCTGAATGTTGTAATCTGCAAGAGT 630423 Query 563313 TCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCC 563372 |||| || ||||| || || |||||||||||||| || ||||| || ||||| || || Sbjct 630424 TCTTCCGTCCTCAAGCTGCTTCCCGGCAAAAATAAGCCTCTGCTGGTCGGGAGGGATGCC 630483 Query 563373 TTCTTTATCTTGAATTTT 563390 |||||| || || ||||| Sbjct 630484 TTCTTTGTCCTGGATTTT 630501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029293778850580