Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20displodere_20[genbank_20GCA_5F001642395.1_202016-05-11] 42 sequences; 3,066,400 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq4 190 4e-43 seq34 136 7e-27 >seq4 Length=66353 Score = 190 bits (210), Expect = 4e-43 Identities = 562/860 (65%), Gaps = 31/860 (4%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || || || ||||| |||||||| | ||| || || |||||||| ||| Sbjct 59823 CTGGTACTCAGAGACCCTCTTCTCGAAGAAGTTGGACTTTCCTCGCAGCGAGATGTACTC 59764 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAG 47958 ||| ||| ||| ||||| | | ||| || | | || | ||| | | || || Sbjct 59763 CATAAAGTCGAATGGGTTCTGGGCGTTGTATATCTTTGGCTCGCCAAGCGAGAGAAGAAG 59704 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGT-GATGTTCATGCCTATGAGGG 48017 | || || || |||| ||||| | |||| || | || || ||||| ||||| | Sbjct 59703 CCGGTCAGCAACAAACTCAATGTACTGGCACAT-AGTATCGACATTGATGCCAATGAGAG 59645 Query 48018 ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077 | ||||| | ||||| | ||||| ||||| || ||||| || | || || | Sbjct 59644 AGACGGGGAGAGCCTCGCATAAGAACTCTTTCTCAATTACAACGGCCTCTTCAACGATTT 59585 Query 48078 GCTTAACGCGGGACTCTGAGGGT-TTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCA 48136 ||| || | | | |||||| |||||| | | || | ||| ||| Sbjct 59584 TCTT-------GATTTTATCGCACTTGTTGTTTAGGTGCGAG---TGTAGTAGGCAAGCA 59535 Query 48137 AAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGC 48196 ||||| | || | ||||||||| |||||||| ||| |||| |||||| || |||||| Sbjct 59534 AAGTCGCAATGAAGGCCTTCGTCTCGGCTGATAAGCTCGTTAGAGAAGGTTAGCCCAGGC 59475 Query 48197 ATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCC 48256 || | || | | ||||||||||| || || || || || || |||||||||||||| Sbjct 59474 ATAAGTCCTCGTTTCTTGAGCCAGAAGATAGCTGCAAATGACCCGGAGAAGAAGATGCCT 59415 Query 48257 TCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAG 48316 || || || || || |||| |||| | || || || ||||| ||||| Sbjct 59414 TCAACACAGGCAAAGGCCACTAGCCGCTCTGCAAAGCTGGCCTTAGCATCTGATATCCAC 59355 Query 48317 GAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGC------CCGG 48370 |||||||||||||||||||| || ||| || || |||| ||||| | | Sbjct 59354 CGCAGCGCCCAGTCTGCCTTCTTTTTTATGACCGGGATGTTCTCAATGGCATTAAACAAG 59295 Query 48371 AAGAGCTTCTTGCACT--CACCTG-CGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTAC 48427 || ||| | || || | | || || || | | |||| || | |||| Sbjct 59294 AAAGTCTTTTCGCTCTGGCTCTTGATGTACG------TGTCAATGAGTAG---GGAGTAC 59244 Query 48428 ATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAAC 48487 ||||||| ||| | ||||| || |||||||| ||||||||| | || ||| Sbjct 59243 ATCTCAGCGTGGATGTTCTCAATCATAATCTGGAAGCCGTAGAAGCATCGAGCTTCACTG 59184 Query 48488 ACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCA 48547 | ||||| || | || || || || | ||| || ||||| || || || || || || Sbjct 59183 ATTTGCACCTCAGAGGCAAACCTTTCAACCAGGTTTTCATTAACAATTCCGTCAGAGGCG 59124 Query 48548 GCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAG 48607 ||||||||||| ||||| | || ||| || | |||||| | | || | |||| Sbjct 59123 GCAAAGAAGGCGAGGACGTAGGAAATGAAGTGTCTTTCGTTGGCGTTAAGCTTCTCCCAG 59064 Query 48608 CCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTT 48667 | | |||| | || ||||| |||||||| | |||||||| || | ||| ||| Sbjct 59063 TCAGCCATGTCTCTTCCAAGGTCGACTTCTTCTGCGGTCCAGAAACTAGCCACTGCGTTT 59004 Query 48668 TTGTACATGCCCCATATGTC 48687 ||||||||| ||| ||||| Sbjct 59003 TTGTACATGTTCCAGATGTC 58984 >seq34 Length=240578 Score = 136 bits (150), Expect = 7e-27 Identities = 865/1377 (63%), Gaps = 42/1377 (3%) Strand=Plus/Plus Query 212765 GAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTG 212824 || |||||| || || ||| ||| | |||||||| || || | || |||||||| || Sbjct 162435 GATCTCCCAGACCGTTTTGTAGAGCTGTTTGAGGTGGTCGGGTATGCTTGGGATGTTTTG 162494 Query 212825 CACAGACCCCCTGTGTATGGTCAG-CTGCAGGCGCATGTCCTC---GTTCCAGAGGCCCC 212880 ||||| || ||| |||| | || | | | ||| | |||||| ||| Sbjct 162495 GACAGATCCTTCGTG----GTCAATCACCAAGTTCTTCATCTCAGGGCCCCAGAGCCCCA 162550 Query 212881 TGGTCTCCAGGCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCC 212940 | |||| ||||| |||| || || || | |||||| || || || ||| | Sbjct 162551 AAGAAGCCAGATCATTGACAAGGTATGGATTAACAACCTGGAACTCCCCGGAAAGCGTTC 162610 Query 212941 TCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTG 213000 | | ||| | ||| ||| | || | || ||||||| ||| || ||||| | Sbjct 162611 TTCGGGTGTAGATGTTGCTCGTGAACCCTTCAAAGCACTCGTTGAACCCGAGGATCTGGG 162670 Query 213001 CAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGA 213060 ||| ||| || ||||| | || ||||| ||||||||||||| |||||| | | | Sbjct 162671 AGGTGGAGGCCGTAGGCATCAGCGCAACCAGAAGACTGTTCCTCAGCCCGTGCCTGGCCA 162730 Query 213061 TGAGGCGCCGAAGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCC 213120 | | ||||| ||||||| ||| | || || | ||||||| Sbjct 162731 TTTTCTCCTTGAGCTCCGCCCAGTTCCACCGCGCA--------CTTGGAGAA-ACGTTCC 162781 Query 213121 ACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGC 213180 | | ||| |||||| |||||| ||||| | || ||||||||||| | ||| || | Sbjct 162782 AGAGGTCGTACTGCAGGATGCCCTTGCTGGCTGGACTGCCCTGGTAGGTCTCGTACGGCC 162841 Query 213181 CATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATA 213240 | || |||||||| || || | | ||| | |||||||||||||||| | Sbjct 162842 CGTGGATGGCTGCCAGCTCAACAGAGGCTTCAACGGCCCCAAAGTAGATGGTTTCAAAGA 162901 Query 213241 TCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACA 213300 |||| ||| ||| | ||| ||| | | ||||||||| ||| | | | | Sbjct 162902 TCTCAACGTTAAGCCTGCCGGCTTCTTCGCTCTCAAAGGGCATCTGCATCCTGATGTAGA 162961 Query 213301 CATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTGGAGC 213360 |||| ||||| ||||| || || | |||||| || | ||| || || ||||| | | || Sbjct 162962 CATCCGCCAGGCCCTGAACTCCAAGGCCGATCGGCCGGTGCCTTAGATTAGAGT-GCCGC 163020 Query 213361 -ACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACT 213419 ||||||| | |||||| ||| || ||||| ||||| ||||| | || Sbjct 163021 GACTCCTCAAGGGGGTACTTGTTAACATCAATGATTTTGTTCAGGTTTTTAACAACAACC 163080 Query 213420 TT---GGTGACATGGGCCA---GGTACTCGTGATTGAACACGTAGCCCCCGTCCTGCACA 213473 || ||| | | | || | || | || ||| |||| || | Sbjct 163081 TTAACGGTTTCTTTCAACTTTTGGAAGTCAAACTGCAAAGCGT---CCCCCTCGGAAATG 163137 Query 213474 AACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTAC 213533 || || || || ||| ||||| || ||||| || | ||||| | | || || Sbjct 163138 AAGGTTGGTAGCGCCATGGACGCCAGATTACAAACTGCTATCTCCTCTGGGCTGGTAAAC 163197 Query 213534 TCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGAC 213593 || | ||||| | || || ||||| | ||| || || ||||||| ||||| | Sbjct 163198 TCAACTATCTCTGCACAAAGATTGCTTCCCTTGATAGTCCCAAGGTTCTTCTGGTTGCTC 163257 Query 213594 TTTGCGTTGGCAGAA-TCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACAC 213652 || |||| ||| ||||||||||| |||||||| || ||||| | || | | | Sbjct 163258 TTCCGGTTG-CAGCTGTCCTTGTAGAGGATGTAGGGCACGCCCGTCTCAATCTCAGCCTC 163316 Query 213653 CAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCCGCCTGAC-AGCTCCGGGCGTAG 213711 ||| || |||| || | || ||| || ||||| | | || || || Sbjct 163317 CAGAATGAACTTCCAAAGCTTCCGCGCCGAAACACTCCGCCGGCCCAGACCCTCTCG--- 163373 Query 213712 CCTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCC--GG 213769 ||||||| || || | | || |||| || | ||| || || ||| || Sbjct 163374 -CTCGTACCTCTCATACAAAGCCACAAACTCGTCCCCATAAACCTCGTGAAGGCCCTTGG 163432 Query 213770 ACAGGATGCGGGACACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAG 213829 | || | ||||| | || |||| ||| ||| || || | ||||||||||| Sbjct 163433 CCTGGT--CCGGACAGAAAAGCGTCCACTCCAAGTCGTCCTCCACCCGCTGCATGAACAA 163490 Query 213830 GTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTT 213889 || || | ||||||||| ||||| || || || |||||| || | ||| Sbjct 163491 ATCGGGTATCCACAGCGCCAGGAACAAACTCCGGGCTCTGAGCTCGTCTTTGCCCGTGTT 163550 Query 213890 TTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAA 213949 ||| | ||| || || |||||||||| || | |||||||||||||| ||||| ||| Sbjct 163551 TTTCCTCAGCTCCAGGAAGTCAAAGACATCGGGGTGCCACGGCTCCAGGTAGACCACAAT 163610 Query 213950 GGCGCCCGGCC---TCTTGCCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCG 214006 || ||| |||| | ||||| ||||||||||| ||| | | | |||| || Sbjct 163611 GGAGCCTGGCCGCTTGTTGCCCCCCTGGTCCACATACCTTGAGGTCGCATCAAAGACCCG 163670 Query 214007 CAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGC 214066 || | || || |||||||| || || || ||| ||| || || ||| | ||| Sbjct 163671 AAGCATCGGCACAAGCCCGTTCGAGTGCCCAAAGGTGCCCTTGATGTAGGAGTTGCTGGC 163730 Query 214067 CCTCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCA 214123 | | |||| ||| || || ||||| || |||| ||||||||| | ||||| Sbjct 163731 TCGGATGTTGTGGATGCTGACGCCAATGCCCCCAGCGTGCTTGGAGATTAGCGCGCA 163787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931532310945280