Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20displodere_20[genbank_20GCA_5F001642395.1_202016-05-11] 42 sequences; 3,066,400 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq34 174 3e-38 seq4 143 5e-29 >seq34 Length=240578 Score = 174 bits (192), Expect = 3e-38 Identities = 432/641 (67%), Gaps = 21/641 (3%) Strand=Plus/Plus Query 221714 GCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGG 221773 ||||| ||||| || || | ||| || | ||||| ||| | ||||||| ||| || Sbjct 163159 GCCAGATTACAAACTGCTATCTCCTCTGGGCTGGTAAACTCAACTATCTCTGCACAAAGA 163218 Query 221774 TTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGC-GTCCTT 221832 ||||| | |||||| ||||| |||| || || || ||| || ||| |||| |||||| Sbjct 163219 TTGCTTCCCTTGATAGTCCCAAGGTTCTTCTGGTTGCTCTTCCGGTTG-CAGCTGTCCTT 163277 Query 221833 GTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTC 221892 |||||| || |||| |||| ||||| | || |||| ||||||| | ||| || | Sbjct 163278 GTAGAGGATGTAGGGCACGCCCGTCTCAATCTCAGCCTCCAGAATGAACTTCCAAAGCTT 163337 Query 221893 TCTGGCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCAT 221952 | || || ||| | | | |||||| || | |||| ||| | Sbjct 163338 CCGCGCCGAAACACTCCGCCGGCCCAGACCCTCTCGCT---CGTACCTCTCATACAAAGC 163394 Query 221953 GTCAAACTTTTCACCGTACGCCTCGTCCAGGCC--TGGACACCTGG-CGGGACACATCAG 222009 |||||| || || || |||||| ||||| ||| ||||| | ||||| | || Sbjct 163395 CACAAACTCGTCCCCATAAACCTCGTGAAGGCCCTTGG---CCTGGTCCGGACAGAAAAG 163451 Query 222010 ACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTG 222069 |||| | | || ||| | |||| ||||||||| | || || |||||||||||| | Sbjct 163452 CGTCCACTCCAAGTCGTCCTCCACCCGCTGCATGAACAAATCGGGTATCCACAGCGCCAG 163511 Query 222070 AAAGAGATCTCTGGTC-CGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACT 222128 || | | ||| || | | |||| || ||| ||||||||||||| |||| || | Sbjct 163512 GAACA-AACTCCGGGCTCTGAGCTCGTCTTTGCCCGTGTTTTTCCTCAGCTCCAGGAAGT 163570 Query 222129 CAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGC 222188 |||| | || | ||||||||||||||| ||||| | | | ||| || |||||||||| Sbjct 163571 CAAAGACATCGGGGTGCCACGGCTCCAGGTAGACCACAATGGAGCCTGGCCGCTTGTTGC 163630 Query 222189 CACCCTGATCCACCATCCTCTCCAG--AGCGTTGAAGATGCGAAGGGTCGGTACCAGTCC 222246 | ||||| |||| ||| | || || || | |||| ||||| |||| || || || Sbjct 163631 CCCCCTGGTCCA-CATAC-CTTGAGGTCGCATCAAAGACCCGAAGCATCGGCACAAGCCC 163688 Query 222247 GTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTG--GCA 222304 ||| || | || ||||||||| ||||| | || ||| | | ||| | || Sbjct 163689 GTTCGAGTGCCCAAAGGTGCCCTTGATGTAGGAGTTGCTGGCTCGGATGTTGTGGATGCT 163748 Query 222305 GACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCA 222345 ||| ||| || || || ||||| || ||||| | ||||| Sbjct 163749 GAC--GCCAATGCCCCCAGCGTGCTTGGAGATTAGCGCGCA 163787 >seq4 Length=66353 Score = 143 bits (158), Expect = 5e-29 Identities = 480/733 (65%), Gaps = 41/733 (6%) Strand=Plus/Plus Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 ||||| | || |||||||| |||||||| || || || || || || ||| || || Sbjct 59104 TACGTCCTCGCCTTCTTTGCCGCCTCTGACGGAATTGTTAATGAAAACCTGGTTGAAAGG 59163 Query 25654 TTCACCAGGGAAGTGCAGTAC-GTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 || || || ||||| | ||| || | | || |||||||| |||||||| || Sbjct 59164 TTTGCCTCTGAGGTGCAAATCAGTGAAGCTCGA-TGCTTCTACGGCTTCCAGATTATGAT 59222 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGT 25769 || || | ||| ||||| |||| || || || || |||||||| | ||| Sbjct 59223 TGAGAACATCCACGCTGAGATGTACTCC---CTACTCATTGACACGTACATCA-AGA--- 59275 Query 25770 CGCC-GAGAGAGA----TCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGG 25824 ||| ||| || | | ||||| |||||| ||| |||| || ||| || | | Sbjct 59276 -GCCAGAGCGAAAAGACTTTCTTGTTTAATGCCATTGAGAACATCCCGGTCATAAAAAAG 59334 Query 25825 AAGGCGCGGTGGGCCATGAAGTGGATCAACAGC--CAGAGCGCTACGTTTGGCGAGCGGC 25882 ||||| ||||| || |||||| | ||| | || || | |||| ||||||| Sbjct 59335 AAGGCAGACTGGGCGCTGCGGTGGAT-ATCAGATGCTAAG-GCCAGCTTTGCAGAGCGGC 59392 Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 | || |||||||| ||| || |||||||| ||| ||| || ||||| || ||||||| Sbjct 59393 TAGTGGCCTTTGCCTGTGTTGAAGGCATCTTCTTCTCCGGGTCATTTGCAGCTATCTTCT 59452 Query 25943 GGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGG 26001 |||||||| | | | |||| ||||| ||||| ||| || |||||||| |||||| | Sbjct 59453 GGCTCAAG-AAACGAGGACTTATGCCTGGGCTAACCTTCTCTAACGAGCTTATCAGCCGA 59511 Query 26002 GACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAA 26061 ||||| || || || | || ||||| ||||| || || || ||| | | |||| Sbjct 59512 GACGAAGGCCTTCATTGCGACTTTGCTTGCCTACTACACTCG---CACCTAAACAACAA- 59567 Query 26062 CCTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTT 26121 | | || | || | | ||| | ||||||| || | || ||||| ||||| Sbjct 59568 -GTGC----GATAAAATCAAGAAAATCGTTGAAGAGGCCGTTGTAATTGAGAAAGAGTTC 59622 Query 26122 CNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAAC-AGACTCATGAGCCAATA 26180 | ||||| || | | ||| ||| |||| || Sbjct 59623 TTATGCGAGGCTCTCCCCGTCTCTCTCATTGGCATCAATGTCGATACT-ATGTGCCAGTA 59681 Query 26181 CATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGA-CTCTACAGTA 26239 |||||||| ||| || |||| || || | ||| || | |||| | | |||| | Sbjct 59682 CATTGAGTTTGTTGCTGACCGGCTTCTTCTCTCGCTTGG-CGAGCCAAAGATATACA--A 59738 Query 26240 CGCC--TAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTT 26297 |||| ||||| |||||||||||||| |||| ||| || ||| ||| |||||||||| Sbjct 59739 CGCCCAGAACCCATTCGACTTTATGGAGTACATCTCGCTGCGAGGAAAGTCCAACTTCTT 59798 Query 26298 TGAAAAGAGGGTC 26310 || ||||||||| Sbjct 59799 CGAGAAGAGGGTC 59811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928844312356480