Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20displodere_20[genbank_20GCA_5F001642395.1_202016-05-11] 42 sequences; 3,066,400 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq4 93.3 6e-14 seq1 86.0 9e-12 >seq4 Length=66353 Score = 93.3 bits (102), Expect = 6e-14 Identities = 345/532 (65%), Gaps = 10/532 (2%) Strand=Plus/Minus Query 18179 CCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATTATACCTCttttt 18238 ||||| |||| | || | |||||| || |||| ||| ||||| | |||| ||| Sbjct 59519 CCTTCGTCTCGGCTGATAAGCTCGTTAGAGAAGGTTAGCCCAGGCATAAGTCCTCGTTTC 59460 Query 18239 tttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACCCTCAACGCACGCGAAC 18298 || ||||| || || | ||| || | || ||||| || || ||||| || || || Sbjct 59459 TTGAGCCAGAAGATAGCTGCAAATGACCCGGAGAAGAAGATGCCTTCAACACAGGCAAAG 59400 Query 18299 GCTATTAATCTTTCAGCAAAACTGTATTTATTGC-TCAG-TATCCATTTTTGTGCCCATT 18356 || | || | || ||||| ||| ||| || || | |||||| | ||||| | Sbjct 59399 GCCACTAGCCGCTCTGCAAAGCTGGCCTTA--GCATCTGATATCCACCGCAGCGCCCAGT 59342 Query 18357 CTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAAACAA-ATCATCTTTT-TC 18414 || | | || ||| || |||| || ||||||||||| | |||||| | Sbjct 59341 CTGCCTTCTTTTTTATGACCGGGATGTTCTCAATGGCATTAAACAAGAAAGTCTTTTCGC 59282 Query 18415 TTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGCTTTC 18474 | ||| || || || || ||||| || | | || ||||| |||| || ||| | || Sbjct 59281 TCTGG-CTC-TTGATGTACGTGTCAATGAGTAGGGAGTACATCTCAGCGTGGATGTTCTC 59224 Query 18475 CATAGCTATCTGAAAACTATAAAACGATCTAGCCTC-GGGATATTGAATCTCGCTATAAA 18533 || ||||| || | || || ||| ||| || ||| ||| | ||| || Sbjct 59223 AATCATAATCTGGAAGCCGTAGAAGCATCGAGCTTCACTGAT-TTGCACCTCAGAGGCAA 59165 Query 18534 ATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAAACAT 18593 | ||||| |||| || |||||||| || ||||||| | || || || || | || | Sbjct 59164 ACCTTTCAACCAGGTTTTCATTAACAATTCCGTCAGAGGCGGCAAAGAAGGCGAGGACGT 59105 Query 18594 ATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCATTCATCTATATCTTTTGATA 18653 | |||||| ||| |||| || | || || || | ||| ||| | || ||| || | Sbjct 59104 AGGAAATGAAGTGTCTTTCGTTGGCGTTAAGCTTCTCCCAGTCAGCCATGTCTCTTCCAA 59045 Query 18654 GATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGTTTGTACATTTT 18705 | || |||||||| | ||||| ||| | | || | ||||||||| || Sbjct 59044 GGTCGACTTCTTCTGCGGTCCAGAAACTAGCCACTGCGTTTTTGTACATGTT 58993 >seq1 Length=651558 Score = 86.0 bits (94), Expect = 9e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || ||| | || || || || ||||| ||||| || || |||| Sbjct 630585 ATGCAGATCTTCGTAAAGACACTCACAGGCAAGACCATTACCTTAGACGTGGAGAATTCA 630526 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || | ||||| | ||||| || || ||||||||||| ||||| || || Sbjct 630525 GACACGGTTGACACTGTGAAGACCAAAATCCAGGACAAAGAAGGCATCCCTCCCGACCAG 630466 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | |||| |||||| |||||||| || || |||||| | ||||||| || Sbjct 630465 CAGAGGCTTATTTTTGCCGGGAAGCAGCTTGAGGACGGAAGAACTCTTGCAGATTACAAC 630406 Query 156003 AT 156004 || Sbjct 630405 AT 630404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731871615767200