Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20displodere_20[genbank_20GCA_5F001642395.1_202016-05-11] 42 sequences; 3,066,400 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq4 98.7 1e-14 seq1 87.8 2e-11 >seq4 Length=66353 Score = 98.7 bits (108), Expect = 1e-14 Identities = 153/213 (72%), Gaps = 12/213 (6%) Strand=Plus/Minus Query 868717 CTCGAAAAAGTTGGTCTTGCCCTCG-AGCGAGATCAACTCCATCCACGGGAACGGGTT-- 868773 |||||| ||||||| ||| || ||| |||||||| ||||||| | ||| ||||| Sbjct 59802 CTCGAAGAAGTTGGACTTTCC-TCGCAGCGAGATGTACTCCATAAAGTCGAATGGGTTCT 59744 Query 868774 GGGCGTCTTGTAGTGCTTT---TCGCATCCGAGCGACGCGAGCAGGCGGTCGGCGACAAA 868830 |||||| |||| |||| |||| | ||||| || || ||||| || ||||| Sbjct 59743 GGGCGT--TGTATATCTTTGGCTCGC---CAAGCGAGAGAAGAAGCCGGTCAGCAACAAA 59689 Query 868831 CTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCACCGGCAGCGACTC 868890 ||| |||||||||||||| || | || ||||| ||||| | || || || | ||| Sbjct 59688 CTCAATGTACTGGCACATAGTATCGACATTGATGCCAATGAGAGAGACGGGGAGAGCCTC 59629 Query 868891 GCTCACAAACTCTTTCTCGATCTCGACGGCCTC 868923 || | ||||||||||| || | |||||||| Sbjct 59628 GCATAAGAACTCTTTCTCAATTACAACGGCCTC 59596 Score = 89.7 bits (98), Expect = 6e-12 Identities = 138/192 (72%), Gaps = 5/192 (3%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 |||||||| || ||||| | ||||| |||| || || ||||| || || || ||| Sbjct 59519 CCTTCGTCTCGGCTGATAAGCTCGTTAGAGAAGGTTAGCCCAGGCATAAGTCCTCGTTTC 59460 Query 869240 TTGAGCCAAAAGATGGC-GCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 |||||||| ||||| || ||| || || ||||| |||||||| || || |||||| Sbjct 59459 TTGAGCCAGAAGATAGCTGCA-AATGACCCGGAGAAGAAGATGCCTTCAACACAGGCAAA 59401 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358 | | | |||||||| |||||| || | | || || | |||||| || |||||| Sbjct 59400 GGCCACTAGCCGCTCTGCAAAGCTGGCCTTAGCATC--TGAT-ATCCACCGCAGCGCCCA 59344 Query 869359 GTCGGCCTTTTT 869370 ||| ||||| || Sbjct 59343 GTCTGCCTTCTT 59332 >seq1 Length=651558 Score = 87.8 bits (96), Expect = 2e-11 Identities = 160/234 (68%), Gaps = 3/234 (1%) Strand=Plus/Plus Query 1852040 AGGCCGATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTGCCGCTCTCGGTGAGGCCCGGC 1852099 || ||||| || ||| | || ||| |||||| ||||| || || || ||||| Sbjct 178094 AGCCCGATTTTTGAGTTTTCTTCACTGCTGCTCATTTTGCC---CTGGGACAGCCCCGGG 178150 Query 1852100 ACGAGCGGGTTGAGCAGGTGGAAGCGCTTCCGATAGCCGAGGACCGGCAGGTGGTCGCGC 1852159 || | ||| || | ||||||| |||||||| || || || | |||| || | | Sbjct 178151 ACCATCGGATTCATTAGGTGGACCCGCTTCCGGTACCCAAGCATTGGCAAGTACTTCTCC 178210 Query 1852160 GCAAAGGCAAATATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGC 1852219 || || ||| ||||| | |||||| || ||||||||||| || || | |||| | Sbjct 178211 GCGTAGATAAAAATCTTTCTCTGGTCAATGCCTCCAAACTGGGCATCAACCCCCAGGTAC 178270 Query 1852220 TGCTCGTCGAGGGCCTGCATGAGCGGGTAGAGCACGTTGCTCAGGAGCGGGTTG 1852273 | || || ||||||||||| |||||||| || ||| || | ||||||| Sbjct 178271 TCTTCATCCAGGGCCTGCATCCCCGGGTAGACCAGCCCGCTGAGAATCGGGTTG 178324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107135753283314