Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20displodere_20[genbank_20GCA_5F001642395.1_202016-05-11] 42 sequences; 3,066,400 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq4 122 1e-21 seq1 96.9 5e-14 >seq4 Length=66353 Score = 122 bits (134), Expect = 1e-21 Identities = 229/331 (69%), Gaps = 13/331 (4%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 |||||||| || ||||| | ||||| ||| || || ||||| || || || ||| Sbjct 59519 CCTTCGTCTCGGCTGATAAGCTCGTTAGAGAAGGTTAGCCCAGGCATAAGTCCTCGTTTC 59460 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCC--GAGAAAAAGATGCCCTCGACGGCGGCAA 794458 |||||||| ||||| || | || || || ||||| |||||||| || || ||||| Sbjct 59459 TTGAGCCAGAAGATAGCT--GCAAATGACCCGGAGAAGAAGATGCCTTCAACACAGGCAA 59402 Query 794459 AGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCC 794518 || | || |||||||| ||||| || || | ||| | | |||||| || ||||| Sbjct 59401 AGGCCACTAGCCGCTCTGCAAAGCTGGCCTTAGCATCT--GAT-ATCCACCGCAGCGCCC 59345 Query 794519 ACTCTGCCTT---TTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCT 794575 | |||||||| ||| | |||| | | | || ||||| ||| | | || Sbjct 59344 AGTCTGCCTTCTTTTTTATGACCGGG---ATGTTCTCAATGGCATTAAACAAGAAAGTCT 59288 Query 794576 TCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGT 794635 | ||| | || ||||| ||| ||||| ||||| || ||||| |||| | |||||||| Sbjct 59287 TTTCGCTCTGGCTCTTGATGTACGTGTCAATGAGTAGGGAGTACATCTCAGCGTGGATGT 59228 Query 794636 TTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 | || || ||||||||||| || ||||| Sbjct 59227 TCTCAATCATAATCTGGAAGCCGTAGAAGCA 59197 Score = 95.1 bits (104), Expect = 2e-13 Identities = 152/211 (72%), Gaps = 8/211 (4%) Strand=Plus/Minus Query 793925 CTCGAAAAAGTTGGTCTTGCCCTCG-AGCGAGATCAACTCCATCCACGGGAACGGGTT-- 793981 |||||| ||||||| ||| || ||| |||||||| ||||||| | ||| ||||| Sbjct 59802 CTCGAAGAAGTTGGACTTTCC-TCGCAGCGAGATGTACTCCATAAAGTCGAATGGGTTCT 59744 Query 793982 GGCCGTCAGGTAGTGCTTCTCGCAC-CCGAGCGACGCAAGCAGGCGGTCGGCGACGAATT 794040 || ||| ||| ||| | || | || ||||| ||| || ||||| || || || | Sbjct 59743 GGGCGTT--GTATATCTT-TGGCTCGCCAAGCGAGAGAAGAAGCCGGTCAGCAACAAACT 59687 Query 794041 CAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAGCGACTCGC 794100 |||||||||||||||| || | || ||||| ||||| | ||||| || | ||||| Sbjct 59686 CAATGTACTGGCACATAGTATCGACATTGATGCCAATGAGAGAGACGGGGAGAGCCTCGC 59627 Query 794101 TGACAAACTCTTTCTCGATCTCGACGGCCTC 794131 | ||||||||||| || | |||||||| Sbjct 59626 ATAAGAACTCTTTCTCAATTACAACGGCCTC 59596 >seq1 Length=651558 Score = 96.9 bits (106), Expect = 5e-14 Identities = 186/269 (69%), Gaps = 9/269 (3%) Strand=Plus/Plus Query 2411404 TCGCTGGCGCTCATCTTGCCGTCCTTGGTGAGGCCCGGCACCAGCGGGTTGAGCAGGTGG 2411463 || ||| |||||| ||||| || || || ||||| |||| ||| || | |||||| Sbjct 178115 TCACTGCTGCTCATTTTGCC---CTGGGACAGCCCCGGGACCATCGGATTCATTAGGTGG 178171 Query 2411464 ATGCGCTTGCGGTAGCCCAGCGCCGGCAGGTGGTCGCGCGCAAAGGCAAAGATCTTGCGC 2411523 | ||||| ||||| || ||| |||| || | ||| || ||| ||||| | | Sbjct 178172 ACCCGCTTCCGGTACCCAAGCATTGGCAAGTACTTCTCCGCGTAGATAAAAATCTTTCTC 178231 Query 2411524 TGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGCTCGTCGAGGGCCTGCATG 2411583 ||||| || ||||||||||| || || | |||| || || || ||||||||||| Sbjct 178232 TGGTCAATGCCTCCAAACTGGGCATCAACCCCCAGGTACTCTTCATCCAGGGCCTGCATC 178291 Query 2411584 AGCGGGTAGACGAGGTTGCTGAGCGGCGGGTTG-CGGTCCATCTTGACCACCTGGGCGGC 2411642 ||||||||| || |||||| ||||||| |||| | || ||||| | || | Sbjct 178292 CCCGGGTAGACCAGCCCGCTGAGAATCGGGTTGTTGGTCTGT-TTAACCACTTCTGCCCC 178350 Query 2411643 GG--CCTTTTGCGCCGTGCCGACGGTCAC 2411669 || | || ||| |||| ||||||||| Sbjct 178351 GGCTCGTTGGGCGTCGTG--GACGGTCAC 178377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916241932268438