Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20displodere_20[genbank_20GCA_5F001642395.1_202016-05-11] 42 sequences; 3,066,400 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq12 145 5e-30 seq2 145 5e-30 seq1 107 1e-18 >seq12 Length=514210 Score = 145 bits (160), Expect = 5e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34750 TCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGA 34809 |||||||| | ||| || ||||| ||||| ||||| |||||||||||||| ||||| || Sbjct 293334 TCCTCCCCGGAGCCTGAGCACCAGATGAATCGTGCTTTCCTTCTGAATGTTGTAGTCTGA 293275 Query 34810 TAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGG 34869 || | | |||| || || ||||||||||||||||| |||| ||||||||| || Sbjct 293274 AAGTGTCCTTCCATCCTCAAGCTGCTTTCCGGCGAAGATAAGTCTTTGCTGGTCAGAAGG 293215 Query 34870 CACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGAC 34929 | ||||||||||| | || ||| || ||| |||| | ||| || | ||| Sbjct 293214 TATTCCCTCCTTGTCCTGAATCTTTGCCTTTACGTTCTCTATTGTGTCAGTGCTTTGGAC 293155 Query 34930 ATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| ||| || ||||| || || || |||||||| || |||||||| Sbjct 293154 GTCAATGGTGATCGTCTTGCCTGTAAGCGTCTTTACGAATATCTGCAT 293107 >seq2 Length=77616 Score = 145 bits (160), Expect = 5e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34750 TCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGA 34809 |||||||| | ||| || ||||| ||||| ||||| |||||||||||||| ||||| || Sbjct 15635 TCCTCCCCGGAGCCTGAGCACCAGATGAATCGTGCTTTCCTTCTGAATGTTGTAGTCTGA 15576 Query 34810 TAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGG 34869 || | | |||| || || ||||||||||||||||| |||| ||||||||| || Sbjct 15575 AAGTGTCCTTCCATCCTCAAGCTGCTTTCCGGCGAAGATAAGTCTTTGCTGGTCAGAAGG 15516 Query 34870 CACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGAC 34929 | ||||||||||| | || ||| || ||| |||| | ||| || | ||| Sbjct 15515 TATTCCCTCCTTGTCCTGAATCTTTGCCTTTACGTTCTCTATTGTGTCAGTGCTTTGGAC 15456 Query 34930 ATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| ||| || ||||| || || || |||||||| || |||||||| Sbjct 15455 GTCAATGGTGATTGTCTTGCCTGTAAGCGTCTTTACGAATATCTGCAT 15408 >seq1 Length=651558 Score = 107 bits (118), Expect = 1e-18 Identities = 163/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 |||||||| | ||| || || ||||| |||||||| |||||||||||||| || || | Sbjct 630359 CCTCCCCTGAGCCTGAGCACAAGGTGGATGGTGCTTTCCTTCTGAATGTTGTAATCTGCA 630418 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || | | | || || || ||||| ||||| || || || | |||||||| | || Sbjct 630419 AGAGTTCTTCCGTCCTCAAGCTGCTTCCCGGCAAAAATAAGCCTCTGCTGGTCGGGAGGG 630478 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTC---ATTGGCCTCG 34927 | || || ||||| | ||||| || || | | | || || ||| ||| Sbjct 630479 ATGCCTTCTTTGTCCTGGATTTTGGTCTTCACAGTGTCAACCGTGTCTGAATT---CTCC 630535 Query 34928 ACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || | ||| |||||||| || ||||| |||||||| |||||||||||| Sbjct 630536 ACGTCTAAGGTAATGGTCTTGCCTGTGAGTGTCTTTACGAAGATCTGCATG 630586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325692633285998