Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20displodere_20[genbank_20GCA_5F001642395.1_202016-05-11] 42 sequences; 3,066,400 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq12 87.8 1e-12 seq2 87.8 1e-12 >seq12 Length=514210 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||||| | | ||||||| ||||| |||| ||| || |||||||| || || | Sbjct 293334 TCCTCCCCGGAGCCTGAGCACCAGATGAATCGTGCTTTCCTTCTGAATGTTGTAGTCTGA 293275 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || || | ||| || || || || || || | || | ||||||||| || | || Sbjct 293274 AAGTGTCCTTCCATCCTCAAGCTGCTTTCCGGCGAAGATAAGTCTTTGCTGGTCAGAAGG 293215 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 || ||||| ||||| || ||| |||| || || | |||| ||||||| || | Sbjct 293214 TATTCCCTCCTTGTCCTG-AATCTTTGCCTTTACGTTCTCTATTGTGTCAGTGCTTTGGA 293156 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 | |||| || || || ||||| || | || || || |||||||||||| Sbjct 293155 CGTCAATGGTGATCGTCTTGCCTGTAAGCGTCTTTACGAATATCTGCATT 293106 >seq2 Length=77616 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||||| | | ||||||| ||||| |||| ||| || |||||||| || || | Sbjct 15635 TCCTCCCCGGAGCCTGAGCACCAGATGAATCGTGCTTTCCTTCTGAATGTTGTAGTCTGA 15576 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || || | ||| || || || || || || | || | ||||||||| || | || Sbjct 15575 AAGTGTCCTTCCATCCTCAAGCTGCTTTCCGGCGAAGATAAGTCTTTGCTGGTCAGAAGG 15516 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 || ||||| ||||| || ||| |||| || || | |||| ||||||| || | Sbjct 15515 TATTCCCTCCTTGTCCTG-AATCTTTGCCTTTACGTTCTCTATTGTGTCAGTGCTTTGGA 15457 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 | |||| || || || ||||| || | || || || |||||||||||| Sbjct 15456 CGTCAATGGTGATTGTCTTGCCTGTAAGCGTCTTTACGAATATCTGCATT 15407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385219002815922