Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20displodere_20[genbank_20GCA_5F001642395.1_202016-05-11] 42 sequences; 3,066,400 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq12 141 2e-28 seq2 136 8e-27 seq1 104 5e-17 >seq12 Length=514210 Score = 141 bits (156), Expect = 2e-28 Identities = 147/193 (76%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 82619 TTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAA 82678 ||| ||||| || || || || || || | || || || || || || ||||| || || Sbjct 293298 TTCCTTCTGAATGTTGTAGTCTGAAAGTGTCCTTCCATCCTCAAGCTGCTTTCCGGCGAA 293239 Query 82679 GATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATT 82738 ||| |||||||| || || | ||||||||| ||||| || ||||||||||| ||||| || Sbjct 293238 GATAAGTCTTTGCTGGTCAGAAGGTATTCCCTCCTTGTCCTGAATCTTTGCCTTTACGTT 293179 Query 82739 TTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTAC 82798 || || || ||| | || || || | || |||||||||||||| | ||||||||| Sbjct 293178 CTCTATTGTGTCAGTGCTTTGGACGTCAATGGTGATCGTCTTGCCTGTAAGCGTCTTTAC 293119 Query 82799 AAATATCTGCATT 82811 |||||||||||| Sbjct 293118 GAATATCTGCATT 293106 >seq2 Length=77616 Score = 136 bits (150), Expect = 8e-27 Identities = 146/193 (76%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 82619 TTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAA 82678 ||| ||||| || || || || || || | || || || || || || ||||| || || Sbjct 15599 TTCCTTCTGAATGTTGTAGTCTGAAAGTGTCCTTCCATCCTCAAGCTGCTTTCCGGCGAA 15540 Query 82679 GATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATT 82738 ||| |||||||| || || | ||||||||| ||||| || ||||||||||| ||||| || Sbjct 15539 GATAAGTCTTTGCTGGTCAGAAGGTATTCCCTCCTTGTCCTGAATCTTTGCCTTTACGTT 15480 Query 82739 TTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTAC 82798 || || || ||| | || || || | || || ||||||||||| | ||||||||| Sbjct 15479 CTCTATTGTGTCAGTGCTTTGGACGTCAATGGTGATTGTCTTGCCTGTAAGCGTCTTTAC 15420 Query 82799 AAATATCTGCATT 82811 |||||||||||| Sbjct 15419 GAATATCTGCATT 15407 >seq1 Length=651558 Score = 104 bits (114), Expect = 5e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 82619 TTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAA 82678 ||| ||||| || || ||||| | ||| |||| ||||| || || || || || ||||| Sbjct 630394 TTCCTTCTGAATGTTGTAATCTGCAAGAGTTCTTCCGTCCTCAAGCTGCTTCCCGGCAAA 630453 Query 82679 GATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATT 82738 || || || || || || ||||| || ||||| || || || || || | || ||| | Sbjct 630454 AATAAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTGTCCTGGATTTTGGTCTTCACAGT 630513 Query 82739 TTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTAC 82798 |||| ||| || | || || || || || || ||||||||||| | |||||||| Sbjct 630514 GTCAACCGTGTCTGAATTCTCCACGTCTAAGGTAATGGTCTTGCCTGTGAGTGTCTTTAC 630573 Query 82799 AAATATCTGCAT 82810 || |||||||| Sbjct 630574 GAAGATCTGCAT 630585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981826671654238