Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20displodere_20[genbank_20GCA_5F001642395.1_202016-05-11] 42 sequences; 3,066,400 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq1 129 6e-25 seq34 125 7e-24 >seq1 Length=651558 Score = 129 bits (142), Expect = 6e-25 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 133458 TGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGC 133517 || |||||| || ||||| || |||||||| | | || |||||| |||||| Sbjct 630383 TGGATGGTGCTTTCCTTCTGAATGTTGTAATCTGCAAGAGTTCTTCCGTCCTCAAGCTGC 630442 Query 133518 TTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTT 133577 || || || |||| |||| |||||||||||||||||||||||| ||||| ||| || Sbjct 630443 TTCCCGGCAAAAATAAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTGTCCTGGATTTTG 630502 Query 133578 TGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTC 133637 ||| | ||||||||||| | ||||||||| | ||| | ||| ||||| || Sbjct 630503 GTCTTCACAGTGTCAACCGTGTCTGAATTCTCCACGTCTAAGGTAATGGTCTTGCCTGTG 630562 Query 133638 AGAGTTTTTACGAAAATCTGCATGGC 133663 || || |||||||| ||||||||||| Sbjct 630563 AGTGTCTTTACGAAGATCTGCATGGC 630588 >seq34 Length=240578 Score = 125 bits (138), Expect = 7e-24 Identities = 497/773 (64%), Gaps = 17/773 (2%) Strand=Plus/Plus Query 148238 CAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAG 148297 ||| |||| || || || |||| || ||||| ||||| |||| ||| | || Sbjct 162558 CAGATCATTGACAAGGTATGGATTAACAACCTGGAACTCCCCGGAAAGCGTTCTTCGGGT 162617 Query 148298 ATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGT 148357 || | ||||||||| ||| |||||| |||||||| || | ||||| | ||| | Sbjct 162618 GTAGATGTTGCTCGTGAACCCTTCAAAGCACTCGTTGAACCCGAGGATCTGGGAGGTGGA 162677 Query 148358 TGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCG 148417 ||||| ||||| ||| ||||| || ||| | || ||| | | ||||| Sbjct 162678 GGCCGTAGGCATCAGCGCAACCAGAAGACTGTTCCTCAGCCCGTGCCTGGCCATTTTCTC 162737 Query 148418 CTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAG 148477 ||| || ||||||||| ||| ||| || | |||||||| | |||||||||||| Sbjct 162738 CTTGAGCTCCGCCCAGTTCCACCGCGCACTTGGAGAAACGTTCCAGAGGTCGTACTGCAG 162797 Query 148478 AATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAG 148537 ||||| ||| || || ||||||| ||| | |||||| ||||| || ||||| Sbjct 162798 GATGCCCTTGCTGGCTGGACTGCCCTGGTAGGTCTCGTACGGCCCGTGGATGGCTGCCAG 162857 Query 148538 TTC-GCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCA 148596 || ||| || || | || || |||| || || || || | ||| ||| Sbjct 162858 CTCAACAG-AGGCTTCAACGGCCCCAAAGTAGATGGTTTCAAAGATCTCAACGTTAAGC- 162915 Query 148597 GCGCCGCCGAC-TCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCC 148655 |||| | | ||||| || | ||||| ||| || | | | || || |||||| Sbjct 162916 CTGCCGGCTTCTTCGCTCTCAAAGGGCATCTGCATCCTGATGTAGACATCCGCCAGGCCC 162975 Query 148656 TGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGCGGA 148715 || || || | ||| || |||||||| | | || ||| | |||| ||| || || Sbjct 162976 TGAACTCCAAGGCCGATCGGCCGGTGCCTTAGATTAGAGTGCCGCGACTCCTCAAGGGGG 163035 Query 148716 TAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTT-----TGTAATTC 148770 || | ||| || ||||| |||| || || || || ||||| | | ||| Sbjct 163036 TACTTGTTAACATCAATGATTTTGTTCAGGTTTTTAACAACAACCTTAACGGTTTCTTTC 163095 Query 148771 TGC-GCAGCAATTCAAAATCGTACTTGTCATCTACG---ATGCATCGGTT--CACGGCGA 148824 | | || ||||| | | ||| | || ||| | |||| | || | Sbjct 163096 AACTTTTGGAAGTCAAACTGCAAAGCGTCCCCCTCGGAAATGAA--GGTTGGTAGCGCCA 163153 Query 148825 TAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGC 148884 | || || ||||| || || || |||| || ||| | | |||| || ||||| || | Sbjct 163154 TGGACGCCAGATTACAAACTGCTATCTCCTCTGGGCTGGTAAACTCAACTATCTCTGCAC 163213 Query 148885 ACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGT 148944 | |||||||| | ||||| || | |||||| || |||||||| | |||||| || Sbjct 163214 AAAGATTGCTTCCCTTGATAGTCCCAAGGTTCTTCTGGTTGCTCTTCCGGTTGCAGCTGT 163273 Query 148945 CCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATGAAC 148997 ||||||| || ||||| || |||| || || | || | |||| |||||| Sbjct 163274 CCTTGTAGAGGATGTAGGGCACGCCCGTCTCAATCTCAGCCTCCAGAATGAAC 163326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483420546204080